Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04580 ATGTTAGGAAGAGCAGCAACAAATGCATATTCATGGTGGTGGGCTAGCCATGTTAGGACAAAACAATCAAAATGGTTGGAACAAAGCCTCCAAGATATGGAGGAGATAGTGGCCGAGACCCTCAAAATAATTGACGATAGTGGGGACTCGTTTGCCCAAAGGGCGGAAATGTACTACAGAAAGAGACCAGAACTCATAAATTTTGTGGAAGAAGCCTTTAGAGCATTTAGAGCATTAGCAGAGAAATATGATCATCTATCAAAGGAGCTACAAAGTGCGAACCGAACAATTGCCACTGTTTTCCCCGAACAAGTCCATTACAGAATAGATGAGGATGAATATGAAGAAAGTTTCCCTGAAACTAATTCATCATCTACTAACCCTAACGAAACAGAAAAACAATGCAACATTCCTAAACCTCCGAGTATCCCGAAGAAACATAATCGAAGTCCATCTATGTTGCTCTCAAAAAAAGGAACACATAGGAGAAGTGCCAGTACTGCAAAATCTGTTTCAAATTCAACAGTTCAAAGTTCCGGTTTGAGTAAGTTTGAAGCATTAGCCGAAATAGACAAGCTTCAGAAAGATATTTTGGCATTGCAGACTGAGAAAGAATTTGTAAGGAGCTTGTATGAAAATTCATACGAAAAATATTGGGAAATTGAAGACAAAATTACAGGAATGCAAAAAAGAGTTTGCAATTTGCAAGATGAGTTTAATATTAGTACAATTATTGAAGATAATGATGCAAGAGCTTTAATGGCAGCCACGGCGTTAAATTCATGTAAAGAAACCCTAGATAAGTTGAAAGAGGTACAAATACAATCATCCGAGGAAGCTAGAGAAGCACACCAAAAGTTTAAGGAAGCTCATCAGAAATTTGAAAACCTTAGAAGTAACTTTGTTTCCAAGCAAACAAATCAGCGAGACGAGGAAACAGATTCAAAAAGTAAAGATGAAGAAGAGATAGAACTTAGCTTGGAAGAAAATATGCATGTGCATGATGACTTAGCGTCGTTGCATGAGAGGATTAAGGAAAAGCTTGAGGAAGATTCGGGAAGTTCGCTTACGATGACAGAAATTGCAGAGCTGATTGATGAGCTTGTAAGTAAGGTTGTTAGTTTGGAAACGGCAGTTACTTCTCAGAATTCATTGGTAAAGAGACTGAAATCGGAAGCAGATGAACTTCAAACAAATATACAAAGTTTAGAAGAGGACAAAGAAATTCTTCTCGAAGATTCAGAAAATAGTCATAAAAGGATGAAAGAATTGGAAGAGGAGTTGAAGAGAGTTAAAGCTCTCAACAAAAGTGTCGAAAGGCAAGATAAGAATCTCCATACAAACTTTCATGAAGCTAATATTAATCTTGAACATCTTTCAGGAAGATTGAAAAATGTGAAGCTAGATGGGGATTTTGAAAAACATGTAGATGAATTGTCGACTGATAATTTAGCAATCTCGAATGATGTCAAGGAAGATCATGCTACAAATATCAGCGAAGTCATAAATGAAGATGATAAATCTAGTTTGAAGGAAAATGTTGATTTTAGGACTGAAGTGACGCCGGAGCTAACACAACAGGATCAGGTTGAATCACTTGATGTTGAAACCAGGGAGGAAAAAGATAAAACTAACTTGAATCAGATGTTTGGAAATGGATCAGATGACAGAGAAAAGATTATGTTGGAGGAGTACACATCGGTTCTAAAGAACTATAACGATGTAACTGACAAGCTCAACGATACGGAGAACAAAAATCGGAACAGCATTTTTGAATTAGCACTTCAGGTGAAGGAATTGAAGGATGTAGTTGCCACTAAGGACGAAGAAATAAACATTTTACAAAAGAAGCTTAGCTATTCAGAAAGAAATCTGGATGAAAGTCCCCGTACCCCTTTCACCGAGGAAGCGTTTCTTGAAAACGCAGCTCAAGGAGATAACATGCAGGGTACTGAAGTTTCATCTTCAGATATAGGTAGCACTTCTTTTGGAGATCAACATCACCATGTTGAAAACACAGGAAATATTGACATAAGGACAAGATTAATTTTGGTGAGAGAAAAACAAAGTTACAAGAACCGTTCCCTTTCACCATTAGAAAAGAAAATCCGTTCTGAAATAGATGATTTGCTCGAAGAGAATTTAGAGTTCTGGTTGAGGTTCAGCACTTCAGTTCATCAGATTCAAAAGTTCCAAGAATCTTTACAGGACTTAAAAGCAGAACTAAGAAAAATAAAGCATAATAACTTTGTGTCGGAAAGCAAGATGTCATCGAAAGCTATACAATCAGAAATAAAGCCGATATTTAGACATTTGAGAGAAATAAGAACTGAGTTATCATTATGGCTAGAACATAATGAAGTACTGCAAGATGAATTACAAGCTAGACATCCATCATTATGCAGCTTACAAGATGAAATAGCAAGTGCGGCGAATCCAGATTCATCGTCGAAAAAAGGTGAACTTAGTGACCATCAAGCTGCAAAGTTTCAGGGTGAAGTTCTCAACATGAAACAAGAGAGCAACAAGGTTTCTAGTGAACTGGAAGAAGGTTTGAATTATGTAAAAGGACTTAAATTTGAAGTTGAGAAAATACTTGAAGAATTGAATCAAACAATGGGAGATAATAATGACATGAAACATTCCACAAGCCGCACTCGATTACCTTTAAAGTCTTTCTTATTTGGAATCAGGTTGAAGAAGCAAAGACAATCAATGTTTGCATGTGTCAATCCAACATTACAGAAACAATACAGTGATCTAGCATCAGCTGATGATGCACCAATATAG 2790 0.3677 MLGRAATNAYSWWWASHVRTKQSKWLEQSLQDMEEIVAETLKIIDDSGDSFAQRAEMYYRKRPELINFVEEAFRAFRALAEKYDHLSKELQSANRTIATVFPEQVHYRIDEDEYEESFPETNSSSTNPNETEKQCNIPKPPSIPKKHNRSPSMLLSKKGTHRRSASTAKSVSNSTVQSSGLSKFEALAEIDKLQKDILALQTEKEFVRSLYENSYEKYWEIEDKITGMQKRVCNLQDEFNISTIIEDNDARALMAATALNSCKETLDKLKEVQIQSSEEAREAHQKFKEAHQKFENLRSNFVSKQTNQRDEETDSKSKDEEEIELSLEENMHVHDDLASLHERIKEKLEEDSGSSLTMTEIAELIDELVSKVVSLETAVTSQNSLVKRLKSEADELQTNIQSLEEDKEILLEDSENSHKRMKELEEELKRVKALNKSVERQDKNLHTNFHEANINLEHLSGRLKNVKLDGDFEKHVDELSTDNLAISNDVKEDHATNISEVINEDDKSSLKENVDFRTEVTPELTQQDQVESLDVETREEKDKTNLNQMFGNGSDDREKIMLEEYTSVLKNYNDVTDKLNDTENKNRNSIFELALQVKELKDVVATKDEEINILQKKLSYSERNLDESPRTPFTEEAFLENAAQGDNMQGTEVSSSDIGSTSFGDQHHHVENTGNIDIRTRLILVREKQSYKNRSLSPLEKKIRSEIDDLLEENLEFWLRFSTSVHQIQKFQESLQDLKAELRKIKHNNFVSESKMSSKAIQSEIKPIFRHLREIRTELSLWLEHNEVLQDELQARHPSLCSLQDEIASAANPDSSSKKGELSDHQAAKFQGEVLNMKQESNKVSSELEEGLNYVKGLKFEVEKILEELNQTMGDNNDMKHSTSRTRLPLKSFLFGIRLKKQRQSMFACVNPTLQKQYSDLASADDAPI 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04580 929 MobiDBLite consensus disorder prediction 119 136 - -
Trre5g04580 929 MobiDBLite consensus disorder prediction 647 670 - -
Trre5g04580 929 Pfam KIP1-like protein 11 84 IPR011684 GO:0003779
Trre5g04580 929 Coils Coil 76 96 - -
Trre5g04580 929 Coils Coil 379 444 - -
Trre5g04580 929 MobiDBLite consensus disorder prediction 298 323 - -
Trre5g04580 929 Coils Coil 728 748 - -
Trre5g04580 929 PANTHER PROTEIN NETWORKED 2D 1 923 - -
Trre5g04580 929 Coils Coil 597 617 - -
Trre5g04580 929 MobiDBLite consensus disorder prediction 153 174 - -
Trre5g04580 929 Coils Coil 183 210 - -
Trre5g04580 929 Coils Coil 280 300 - -
Trre5g04580 929 MobiDBLite consensus disorder prediction 113 174 - -
Trre5g04580 929 MobiDBLite consensus disorder prediction 647 669 - -
Trre5g04580 929 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Trre5g04580 929 MobiDBLite consensus disorder prediction 305 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04580 Trre-Chr5 47665521 47669309 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04580 - - tpra:123915044 1404.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04580 5 47665521 47669309 Trre5g04580 5 47665521 47669309 ECH
Trre9g03508 9 43864272 43869056 Trre5g04580 5 47665521 47669309 PCT