Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04318 ATGTCGAATCTCGAACCGGCACAACAGATGCTGACTCGACGACCGTCGAGAAGCGCCGCAATGACCACCTTCTCGATGGAGGTTTTCGACCATGACGTTGTCGTTCCTTCGTCACTCGCCTCGATTACGCCCATTCTCCGTGTAGCCAATGAGATTGAAAGTGATCGTCCAAGGGTTGCCTACCTTTGTCGATTTTATGCGTTTGAAAAGGCACACCGATTGGATCAAAGTTCAAGTGGGCGTGGTGTGAGGCAGTTTAAAACACTATTGTTGCAGCGATTGGAGAGGGACAATGCAACGAGTCTAGAGGCTCGTACTAAGAAGACAGATGCAAGGGAAATCCAAGCTTATTATCAGCAATATTACGAGAATTATGTCAAAGCTCTTGATCAAGGAGAGCAAGCTGACAGAGCACAGCTTGGTAAAGCTTACCAGACTGCTGGTGTGCTTTTTGAAGTGCTTTGTGCTGTTAACAAGACTGAGAAAGTCGAAGAAGTTGCTCCTGAGATTATTGCAGCTGCTAGAGATGTCCAGGAAAAGACGGAAATTTATGCACCTTTTAACATTCTTCCCTTGGATTCTGCTGGGGCTTCTCAGCCTATTATGCAGCTTGAAGAGATTAAGGCGGCTGTTTCTGCGCTCTGGAATACTCGTGGCTTGAACTGGCCTAGTTCATTCGAGCAAACTCGCCAGAGAACAGGAGATTTGGATCTGCTTGATTGGCTCAGATCCACGTTTGGGTTCCAGAAAGACAATGTTAGGAACCAGAGAGAGCATTTGATTCTGCTTCTTGCTAACTCTCATATAAGGCTATACCCCAAACCCGAGCCTCTCAACAAGCTTGATGACCGCGCAGTTAATTCAGTGATGAATGATCTCTTTAAGAATTACAAGACGTGGTGCAAATTTTTGGGACGGAAACATAGTTTACGACTTCCTCAAGGTCAGGAAAATATACAGCAGAGGAAGTTGCTTTATATGAGCTTGTATCTTCTCATATGGGGAGAAGCATCCAATCTTCGCTTCATGCCGGAGTGTCTATGCTACATATTTCACAATATGGCATACGAACTTCATGGTTTATTGGCTGGAAATGTCAGCATTGTTACTGGTGAAAACATCAAACCTTCTTATGGTGGTGAAGATGAGGCATTCTTGCGTAGGGTTGTAGCTCCCATATACAGAGTCATTCAAACAGAAGCTGATAAGAGCAGAAATGGAACGGCTCCTCACTCAGCCTGGTGCAACTATGATGATCTAAATGAGTATTTCTGGTCACATGATTGCTTTTCTCTTGGATGGCCCATGCGTGATGATGGTGAATTTTTTAAATCTACATTTAATTTGCAACAGCCAAGAAAAGGTGTTCAACCAAAATCCACAAGAACTGGCAAATCAAATTATGTTGAGACCCGGTCATTCTGGAATCTCTTCCGCTCTTTTGATCGTCTTTGGACCTTTTATTTAATGGCTTTGCAGGCGATGTTCATAATTGCATGGGGAGATATTTCAGTGTTAGAAATATTTCAGAAAGATGTCCTATATAAACTCTCTAGCATATTCATCACAGCAGCCATTCTTCGTTTACTTCAAAGTATCTTGGACTTGTCTCTGAATTTTCCTGGCTATCATCGCTGGAGATTCACTGATGTGCTAAGAAATATTCTCAAAGTCATTGTTAGTCTTTTTTGGGTTATTATTCTTCCACTATTCTATATGCATTCCTTCGCTGGTGCCCCGGATTTTATCAAGAAGTTGCTTTCTTTTGTTCATGAAATGAAAGGGATTCCACCATATTATATCTTAGCAGTTGCAGTATATTTAATCCCAAATGTACTAGCGGCCTTTCTTTTTCTATTCCCAATGCTTAGGCGTTGGATTGAAAACTCAGACTGGCACATAATTAGACTCCTCTTATGGTGGTCACAGCCAAGAATCTATGTCGGACGAGGAATGCATGAGAGTCAATTTGCTCTCCTTAAGTACACTCTTTTCTGGGTGCTTCTTTTGGCTGCCAAATTTTCCTTCAGCTTTTTTGTCCAGATCAAACCTCTTGTTAAGCCAACTAAGGACATAATGAGCATTAAACATGTTGATTATGGGTGGCATGAATTTTTCCCGAATGCTCAAAATAACATTGGGGCAGTTGCTTCACTCTGGGTTCCCGTACTTATGGTTTATTTCATGGACACCCAAATTTGGTATGCCATCTTCTCAACTGTGTGTGGTGGTGTTCTTGGAGCCTTCGATCGTCTGGGAGAGATACGCACTCTGACCATGCTAAGATCAAGGTTTCAGTCATTGCCTGGTGCATTCAACACATACTTGGTTCCTACTGACAAGAGAAAAAGGAGAAAAGGATTCTCTCTCGCAAAGAGATTTGCCGAGATTCCCGCAAACAGAAGGAGTGAAGCTGCTAAATTTGCCCAATTATGGAATGAAATTATTTGCAGTTTCCGCGAGGAAGATATTATAAGTGATAGGAAAGGCCTCTAG 2496 0.4251 MSNLEPAQQMLTRRPSRSAAMTTFSMEVFDHDVVVPSSLASITPILRVANEIESDRPRVAYLCRFYAFEKAHRLDQSSSGRGVRQFKTLLLQRLERDNATSLEARTKKTDAREIQAYYQQYYENYVKALDQGEQADRAQLGKAYQTAGVLFEVLCAVNKTEKVEEVAPEIIAAARDVQEKTEIYAPFNILPLDSAGASQPIMQLEEIKAAVSALWNTRGLNWPSSFEQTRQRTGDLDLLDWLRSTFGFQKDNVRNQREHLILLLANSHIRLYPKPEPLNKLDDRAVNSVMNDLFKNYKTWCKFLGRKHSLRLPQGQENIQQRKLLYMSLYLLIWGEASNLRFMPECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSYGGEDEAFLRRVVAPIYRVIQTEADKSRNGTAPHSAWCNYDDLNEYFWSHDCFSLGWPMRDDGEFFKSTFNLQQPRKGVQPKSTRTGKSNYVETRSFWNLFRSFDRLWTFYLMALQAMFIIAWGDISVLEIFQKDVLYKLSSIFITAAILRLLQSILDLSLNFPGYHRWRFTDVLRNILKVIVSLFWVIILPLFYMHSFAGAPDFIKKLLSFVHEMKGIPPYYILAVAVYLIPNVLAAFLFLFPMLRRWIENSDWHIIRLLLWWSQPRIYVGRGMHESQFALLKYTLFWVLLLAAKFSFSFFVQIKPLVKPTKDIMSIKHVDYGWHEFFPNAQNNIGAVASLWVPVLMVYFMDTQIWYAIFSTVCGGVLGAFDRLGEIRTLTMLRSRFQSLPGAFNTYLVPTDKRKRRKGFSLAKRFAEIPANRRSEAAKFAQLWNEIICSFREEDIISDRKGL 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04318 831 FunFam callose synthase 3 26 184 - -
Trre5g04318 831 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 102 829 - -
Trre5g04318 831 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 323 434 IPR026899 -
Trre5g04318 831 SMART FKS1_dom1_2 321 437 IPR026899 -
Trre5g04318 831 Pfam Vta1 like 41 169 IPR039431 -
Trre5g04318 831 Gene3D - 28 189 IPR023175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04318 Trre-Chr5 45309258 45315606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04318 5 829 Glycosyltransferase AT5G13000 58.423 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04318 K11000 - gmx:100777245 1457.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04318 5 45309258 45315606 Trre7g05202 7 58593959 58595399 PCT