Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03598 ATGTCTCTTCTGTCTAGCACTGACTTGCATCGTATTTTTGAGAAGCTAGACACAAATTGCGACGGTTTTGTAAGTCTTGAGGAGCTAAATTGGGTGCTCCAAAGAATAGGTAATAATAATTCACAATTTAGCTTAGATGAGCTTGAATCTCTTGTGGAAAAGAAGAACTTAGACTTCAATGAATTCTTGTTCTTTTACAACTCTATATCAAAACAAAATAATGGAGAGAACAAAGGAGGTGATGGTATTGATGATGATGATGAGGAGTTGGAGAGGGATCTTTTGAAGACTTTTAAAGTGTTTGATTTGAATGGAGATGGATTCATCACAAGCCAAGAGCTTGAGTGTGTCTTGAAGAGACTCGGATTTTTGGATGAAAGAAGTGGTAAGGATTGTAGAAGCATGATTCGGTTTTATGATACAAATTTGGATGGTAGGCTTGATTTTCAGGAATTCAAGAACATGATGTTGCTTACAACTACATGA 486 0.3621 MSLLSSTDLHRIFEKLDTNCDGFVSLEELNWVLQRIGNNNSQFSLDELESLVEKKNLDFNEFLFFYNSISKQNNGENKGGDGIDDDDEELERDLLKTFKVFDLNGDGFITSQELECVLKRLGFLDERSGKDCRSMIRFYDTNLDGRLDFQEFKNMMLLTTT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03598 161 SMART efh_1 131 159 IPR002048 GO:0005509
Trre5g03598 161 SMART efh_1 93 121 IPR002048 GO:0005509
Trre5g03598 161 SMART efh_1 8 36 IPR002048 GO:0005509
Trre5g03598 161 Pfam EF-hand domain pair 93 156 IPR002048 GO:0005509
Trre5g03598 161 SUPERFAMILY EF-hand 8 158 IPR011992 -
Trre5g03598 161 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Trre5g03598 161 FunFam Calmodulin 1 4 159 - -
Trre5g03598 161 CDD EFh 96 156 IPR002048 GO:0005509
Trre5g03598 161 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Trre5g03598 161 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 67 156 - -
Trre5g03598 161 Gene3D - 5 70 - -
Trre5g03598 161 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Trre5g03598 161 Gene3D - 71 157 - -
Trre5g03598 161 Pfam EF hand 12 29 IPR002048 GO:0005509
Trre5g03598 161 ProSiteProfiles EF-hand calcium-binding domain profile. 127 161 IPR002048 GO:0005509
Trre5g03598 161 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03598 Trre-Chr5 34501668 34502153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03598 2 157 EF-hand Containing Proteins AT1G21550 46.795 6.57e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03598 K13448 - gmx:100527117 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03598 5 34501668 34502153 Trre5g03598 5 34501668 34502153 ECH
Trre1g01128 1 8501081 8501527 Trre5g03598 5 34501668 34502153 PCT