Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01128 ATGTGTCCCCTAACTCCCAAAGAATTGGAGCTGATTTTTGAGAAGTTAGACATAAATAGTGATGGATTTTTAACGCTTGAAGAGCTGAACCTTTTGTTAGATAGAACAGGTTTCAAGTTTAGCATAGAGGAGCTAGAATCTCTAGTGGGAAAAAAGAGTCTAGACTTGAGTGAGTTCATGTTCTTTTATGATTCCATATTGAATCACAAAACTGGTGATGTTGATGAGATAGAAAGTGACCTTTTGAAGGCTTTCAAGGTGTTTGATTTGGATGGAGATGGATTCATCACTAGTCAAGAATTGGAATGTGTGTTGAAGAGACTTGGTATGTGGGATGAAGAAAAGGATAGTAGATCAATGATTTACTCATATGACACTAATTTAGATGGCAAGCTTGATTTCAGGGAATTTAAGAACATGATGTTGCTAACACAACAACATGTTTAG 447 0.3602 MCPLTPKELELIFEKLDINSDGFLTLEELNLLLDRTGFKFSIEELESLVGKKSLDLSEFMFFYDSILNHKTGDVDEIESDLLKAFKVFDLDGDGFITSQELECVLKRLGMWDEEKDSRSMIYSYDTNLDGKLDFREFKNMMLLTQQHV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01128 148 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Trre1g01128 148 Gene3D - 74 148 - -
Trre1g01128 148 Gene3D - 3 71 - -
Trre1g01128 148 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Trre1g01128 148 SMART efh_1 116 144 IPR002048 GO:0005509
Trre1g01128 148 SMART efh_1 80 108 IPR002048 GO:0005509
Trre1g01128 148 SMART efh_1 8 36 IPR002048 GO:0005509
Trre1g01128 148 Pfam EF-hand domain pair 79 141 IPR002048 GO:0005509
Trre1g01128 148 CDD EFh 80 141 IPR002048 GO:0005509
Trre1g01128 148 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Trre1g01128 148 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 141 - -
Trre1g01128 148 SUPERFAMILY EF-hand 7 143 IPR011992 -
Trre1g01128 148 Pfam EF hand 12 32 IPR002048 GO:0005509
Trre1g01128 148 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Trre1g01128 148 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Trre1g01128 148 FunFam Calmodulin 1 7 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01128 Trre-Chr1 8501081 8501527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01128 4 142 EF-hand Containing Proteins AT1G21550 45.270 7.36e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01128 K13448 - gmx:100500561 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01128 1 8501081 8501527 Trre1g01128 1 8501081 8501527 ECH
Trre1g01128 1 8501081 8501527 Trre5g03598 5 34501668 34502153 PCT