LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g03581	ATGTTGGCATGTAGTAGTACTCTCTGCCCCTGCCACGTGGCATTCTCCGTCACCTCCCACAATCCCACCATCTTTCCTTTCCGGCGACATACCAACAACCTCACTCTCCGAACAACACACCTCGTCACCGCCTCTCATCTTTCCAATTCTTCTTCCATTCATCTCGCTTTGGATTCTCAGAGTTTGAAGTGTATTGAATCCCATGATGAATCAAGGTTGCCTTGGATTGGTCCGGTTCCGGGTGATATTGCTGAAGTAGAAGCATATTGTAGGATTTTTAGAAATTCTGAAAGGCTTCATAATGCATTAATGGATGCTTTGTGTAACCCTTTCACCGGTGAATGTAGTGTCTCGGGTGATGTTCCGTCCGGTGAGAAACCTCTTTTAGAAGATAAAATAGTTTCTGTACTTGGATGTATGGTTGCTCTTGTTAAAAATGCGAGGGAGGATGTTCTTTCTGGAAGATTTTCAGTAATGTCTCCCGTCCGTGCTGCTGGTGTTGGCACAGTGGAGGAAACCCTTCCCCCACTTGCAATTTTCAGGAGTGAGATGAAAAGGTTTTGTGAGAGTTTGCATGTTGCTCTTGAGAACTATTTAGTTCCTGGGGATGATCGAAATTTGGATGTGTGGAGGAAGCTTCAGAGACTGAAGAATGTATGCTATGATTCCGGTTTTCCTTGCAGAGAGGATTATCCGTGTCCTGCACTATTTGCAAACTGGAGTCCTGTGTATTTATTCAGTTTTGACGAGGACGCGGAGTTCAAAGAATCGGAAGCTGATTTTTGGATTGGTGGGCAGGTAACAGAAGAAGGCCTTAAGTGGCTACTGGATAGAGGATATAAAACTATTGTGGATCTCAGAGAAGAGATTGTAAAAGATAATTTCTACCAAGCTGCTGTGCTTGATGCTGTTTCTTCTGGAAGTATTGAATTGGTCAGAATCCCGGTTGAAGTTGGGACCGCGCCTAAAATGGAACAAGTTGAGAGGTTTGCATCTCTTGTTTCAGATATTAGCAAAAGGCCAATCTATCTGCACAGCAAGGAAGGAGTTTGGAGAACGTCTGCCATGGTTTCCAGATGGAGGGAATACATGGCTCAAACTGCATCCCAGTATGTTTCTAATCAAGCAGTTACTTCCAATGGTATGTCATCAGATTATATAAATGAATCTGGGAAACTGCAGGACTCAACGCCTGCTGAGAGATCCTCCCATGAAAAAGATACTGATTTGTTGCAAGAGGGTTTGAGTTCAATGCATAGTTCTGTTGACTCATTTGACCAAAGTACCTCTCCAAATAAGAATAATGAAAAAACACAAAGTAATGGGACCTTAAGTGGGATTATTCCTATTGACAGGGATTCATCACAAGCTTTTACTACTGGTGGGGAAAGATGTTTTCCCACTTTATCCAACAAAACTAACCCTTTAGAAGCTCAAGTTCTTCCTCATGATATCTTTTCCAAAAAAGAGATGTCCAGATTTTGGGGAAGTAAGAAGGTTTCAAAACCCTCCTGTTCAAGTAATCTGGTCAATAGGTTGGAATGCTTGTCAGATTCAATGAGCATGCATAATAGAAGACTGCAGGGGCAAGAGATTATCAGCAGTGGTCATAATCCTGGGCCTAAAATATTGGGTCCAGCAGTAAGTTCCAATGGGTCAGCTCAGATTGCAATTGGTAACAAGTGGAAGTCAGTGAATATGAATACTTCCAGTTCTGTTAGGACAACAGTTAATGCTTTTAGTGAAAGAGAAATGTATTGCATGACTGATCTCAATAATATTGATAATACAACAAACTCTCAAAGGATTTTAGCCGATGAGGATAAGGCGGGGGAAGACATGGGATTCACTGAAGGAGATATGTGTGCATCTTCAACGGGAGTTGTAAGACTGCAGTCAAGAAAAAAAGCAGAGATGTTCCTAGTACGGACAGATGGATTTTCTTGTGTGAGAGAGAAGGTGACTGAATCTTCATTGGCATTCACGCATCCTAGCACTCAGCAACAAATGCTAATGTGGAAATCTACCCCAAAGACCGTGTTATTGTTGAAAAAGCCTGGGGAGCACCTCATGGAAGAAGCTAAAGAGGTTGCTTCTTTTCTATATAACCAAGAGAAAATGAACGTATTCGTGGAACCTGATGTGCATGATATATTTGCTGGAATTCCTGGATTTGGATTCATTCAGACCTTCTATATTCAAGATACCGGTGATCTACACGAGAAAGTAGATTTTGTGGCATGTTTGGGAGGAGATGGCGTTATATTGCATGCTTCAAATCTATTTAGAGGTGCTGTTCCCCCTGTTGTGTCATTTAACCTTGGTTCCCTCGGCTTTCTGGCTTCTCATACTTTTGAAGACTACAAGCAGGACCTACGAAAAGTCATCCATGGAAATAATAAACAAGATGGTGTATACATCACTCTCAGAATGCGTCTCCGATGTGAAATTTTTCGTAAGGGTAAAGCTATGCCTGGGAAAGTATTTGATATTCTCAATGAAGTTGTTGTTGATCGGGGTTCTAATCCGTACCTTTCCAAGATTGAATGCTATGAACATGACAGACTTATAACAAAGGTACAAGGTGATGGAGTGATCATAGCCACTCCTACTGGAAGCACGGCCTATTCTACAGCTGCCGGAGGTTCTATGGTCCATCCAAATGTTCCATGCATGCTGTTCACTCCAATTTGTCCACATTCGCTCTCATTTAGACCAGTTATACTTCCAGATTCTGCTCAACTTGAATTAAAGATTCCAGAGGATGCTAGAAGCAATGCCTGGGTTTCATTTGATGGGAAGAGAAGGCAGCAACTTTCAAGAGGAGATTCTGTAAGAATATGTATGAGTCAGCATCCTCTTCCAACAGTTAACAAGTTTGACCAAACAGGTGATTGGTTTCATAGTTTGATTCGCTGCTTAAATTGGAATGAAAGACTTGACCAAAAGGCCCTATAA	2958	0.4185	MLACSSTLCPCHVAFSVTSHNPTIFPFRRHTNNLTLRTTHLVTASHLSNSSSIHLALDSQSLKCIESHDESRLPWIGPVPGDIAEVEAYCRIFRNSERLHNALMDALCNPFTGECSVSGDVPSGEKPLLEDKIVSVLGCMVALVKNAREDVLSGRFSVMSPVRAAGVGTVEETLPPLAIFRSEMKRFCESLHVALENYLVPGDDRNLDVWRKLQRLKNVCYDSGFPCREDYPCPALFANWSPVYLFSFDEDAEFKESEADFWIGGQVTEEGLKWLLDRGYKTIVDLREEIVKDNFYQAAVLDAVSSGSIELVRIPVEVGTAPKMEQVERFASLVSDISKRPIYLHSKEGVWRTSAMVSRWREYMAQTASQYVSNQAVTSNGMSSDYINESGKLQDSTPAERSSHEKDTDLLQEGLSSMHSSVDSFDQSTSPNKNNEKTQSNGTLSGIIPIDRDSSQAFTTGGERCFPTLSNKTNPLEAQVLPHDIFSKKEMSRFWGSKKVSKPSCSSNLVNRLECLSDSMSMHNRRLQGQEIISSGHNPGPKILGPAVSSNGSAQIAIGNKWKSVNMNTSSSVRTTVNAFSEREMYCMTDLNNIDNTTNSQRILADEDKAGEDMGFTEGDMCASSTGVVRLQSRKKAEMFLVRTDGFSCVREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKPGEHLMEEAKEVASFLYNQEKMNVFVEPDVHDIFAGIPGFGFIQTFYIQDTGDLHEKVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGFLASHTFEDYKQDLRKVIHGNNKQDGVYITLRMRLRCEIFRKGKAMPGKVFDILNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIIATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSAQLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRICMSQHPLPTVNKFDQTGDWFHSLIRCLNWNERLDQKAL	985

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g03581	985	Gene3D	Protein tyrosine phosphatase superfamily	247	390	IPR029021	-
	Trre5g03581	985	Pfam	ATP-NAD kinase N-terminal domain	739	798	IPR002504	GO:0003951\|GO:0006741
	Trre5g03581	985	FunFam	NAD kinase 2, chloroplastic	667	831	-	-
	Trre5g03581	985	PANTHER	NAD KINASE	281	985	-	-
	Trre5g03581	985	MobiDBLite	consensus disorder prediction	382	449	-	-
	Trre5g03581	985	Gene3D	-	812	952	IPR017437	GO:0003951\|GO:0019674
	Trre5g03581	985	MobiDBLite	consensus disorder prediction	382	397	-	-
	Trre5g03581	985	Hamap	NAD kinase [nadK].	678	976	IPR002504	GO:0003951\|GO:0006741
	Trre5g03581	985	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	261	369	IPR029021	-
	Trre5g03581	985	MobiDBLite	consensus disorder prediction	413	449	-	-
	Trre5g03581	985	Gene3D	-	667	977	IPR017438	-
	Trre5g03581	985	SUPERFAMILY	NAD kinase/diacylglycerol kinase-like	680	980	IPR016064	-
	Trre5g03581	985	MobiDBLite	consensus disorder prediction	398	412	-	-
	Trre5g03581	985	FunFam	NAD kinase 2, chloroplastic	812	952	-	-
	Trre5g03581	985	Pfam	ATP-NAD kinase C-terminal domain	832	958	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g03581	Trre-Chr5	34018077	34023431	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g03581	K00858		-	gmx:100796381	1461.43

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g03581	5	34018077	34023431	Trre5g03581	5	34018077	34023431	ECH
	Trre1g01079	1	8125038	8131493	Trre5g03581	5	34018077	34023431	PCT