Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03412 ATGGGAGTTGGAGGAACTCTAGAGTACTTATCTGATCTAATGGGAAGTGGCCATCACCACCAACACAAGATCAAGAAGAAGAAGCAATTGCAGACAGTAGAGTTGAAGGTGAGAATGGATTGTGATGGTTGTGAGCTTAAAGTCAAGAAAGCCCTTTCTTCAATAAACGGAGTGAAATCAGTGGAGATAAACAGGAAACAGCAAAAAGTGACAGTAATGGGGTATGTGGAGGCAAGTAAGGTGCTAAAGATGGCTAAGTCAACAGGGAAGAAAGCAGAGATTTGGCCTTATGTGCCATACAACATGGTGGCTCATCCTTATGCTGCTCCTTCTTATGACAAAAAGGCTCCTCCTGGATATGTGAGGAGATTGGAGACTACTGGAATTGTTACGACATATGAAGAACCGTGCATCACCACCATGTTCAGTGATGAAAATCCAAATGCCTGCTCCATTATGTAG 462 0.4307 MGVGGTLEYLSDLMGSGHHHQHKIKKKKQLQTVELKVRMDCDGCELKVKKALSSINGVKSVEINRKQQKVTVMGYVEASKVLKMAKSTGKKAEIWPYVPYNMVAHPYAAPSYDKKAPPGYVRRLETTGIVTTYEEPCITTMFSDENPNACSIM 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03412 153 ProSiteProfiles Heavy-metal-associated domain profile. 30 93 IPR006121 GO:0046872
Trre5g03412 153 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 32 151 IPR045181 GO:0046872
Trre5g03412 153 Gene3D - 18 96 - -
Trre5g03412 153 Pfam Heavy-metal-associated domain 36 91 IPR006121 GO:0046872
Trre5g03412 153 CDD HMA 34 93 IPR006121 GO:0046872
Trre5g03412 153 SUPERFAMILY HMA, heavy metal-associated domain 30 96 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03412 Trre-Chr5 30884902 30885605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03412 - - gmx:100776974 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03412 5 30884902 30885605 Trre5g03412 5 30884902 30885605 ECH
Trre7g05056 7 57432832 57433283 Trre5g03412 5 30884902 30885605 PCT