Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03098 ATGATGTTGACCCATAAGCTTCTCACTTGTTTGCAAATTCTAATTTCTTTTTCTTCTTCTTCATTCCATCGATACAACTCACCGTTTCAATCTGAATTCACGTTTCTTTCTTCCACAAAGATGGATTGGCAAGGGCAAAGCCTAGCAGAGAAGTTAATGCAGATAATGTTGCTTGCATTTGCTGTGATTGCCTTTGGAACGGGATATCTTACAGCTTCTTTCCAGACGATGATCCTCATATATGCTGGTGGTGTCGTTCTCACCACATTGGTGACTGTCCCGAATTGGCCCTTTTTCAACCGCCATCCTCTTAAGTGGTTGGATCCAAGTGAGTTAGAAAAGCATCCAAAGCCACAACCATCTTCAAACGTGAATTCAAAGAAGAAACCCATTAAGAAGTAG 402 0.4129 MMLTHKLLTCLQILISFSSSSFHRYNSPFQSEFTFLSSTKMDWQGQSLAEKLMQIMLLAFAVIAFGTGYLTASFQTMILIYAGGVVLTTLVTVPNWPFFNRHPLKWLDPSELEKHPKPQPSSNVNSKKKPIKK 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03098 133 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 41 110 IPR009542 GO:0005787|GO:0006465|GO:0016020
Trre5g03098 133 PANTHER MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT 23 129 IPR009542 GO:0005787|GO:0006465|GO:0016020
Trre5g03098 133 MobiDBLite consensus disorder prediction 110 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03098 Trre-Chr5 26145493 26149178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03098 K12946 - gmx:100777545 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03098 5 26145493 26149178 Trre7g04520 7 53191721 53192002 PCT