Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03081 ATGCGAACCAGGACAGGATTTTGTTATCCTCAAACGCTACCATTTTCAAATATGTGTTATGAATCAAATACCCACAAAAGACAGAAGAGAATGCTGCCGGAAAAACCCACCGGAGAAGAAGGTTCTGATTTCTTTGAATCTTTGCCTGATGACCTTGTCTTCTCTATTCTCACCAAGCTTACTTCCACAACAACTTCTCCATCTGATTTTATCAGTGTTCTAATCACGTGCAAAAGACTAAACGGTTTAGGCCTAAACTCTCTTGTTTTGTCAAAAGCATCCGACAAAACATTATCGGTTAAAGCTAAAAACTGGTGTGACTCTGCTCATCGCTTCCTCAAACGCTGTGCTGATGCTGGAAATATCGAAGCTTGTTACACACTCGGAATGATTCGGTTTTATTGTTTGCAAAACAGAGGAAGTGGCGCGTCGTTAATGGCAAAAGCAGCTATGAAATCTCACGCGCCATCTTTGTACTCATTAGCAGTGATTCAGTTCAATGGAAGCGGTGGAACGAAAAACGACAAGGATTTACGCGCAGGTGTTGCTCTTTGTGCACGCGCTGCATTTCTTGGCCACATAGACGGTTTACGTGAGTTAGGTCACTGTTTACAAGACGGTTACGGCGTTAAACAGGACGTTATAGAGGGACGGCGGTTTTTAGTACAAGCTAACGCCCGTGAACTCGCTGCCGTTTTATCTAACAGCAATAACAAACAGCCGTTGCTGACGTGGTCTATTAACCCGGTTCCGAATCAGCCACCACAGCTTCGGGTTATTTCCGGGTCGGGCTGTCCATTGCTCAGTGATTTTGGTTGTATCATTCCGGTTCAAGAGGCTCACCCAGCAAACCGGTTTATGACTGAGTGGTTTTCTAGTCGAGGTGGGTTTCCGGGTCCGGGTATGAGATTATGTTCTAATACCGGTTGTGGCAGACCGGAGACAAGGAAGCATGAGTTTCGAAGGTGCTCGGTTTGTGGCGTGGTGAATTACTGCTCACGCGCTTGTCAAGCGCTTGATTGGAAGTTCCGACACAAGGTGGAGTGTGCACCGGTTGAGAGGTGGCAGGATGAGGAGGGCGAACATGTTCCCGGTGAGAATGACGGCGGCAACCTTGGTGAGGTGGTTGTGCTTGATAGCTAG 1143 0.4698 MRTRTGFCYPQTLPFSNMCYESNTHKRQKRMLPEKPTGEEGSDFFESLPDDLVFSILTKLTSTTTSPSDFISVLITCKRLNGLGLNSLVLSKASDKTLSVKAKNWCDSAHRFLKRCADAGNIEACYTLGMIRFYCLQNRGSGASLMAKAAMKSHAPSLYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDGLRELGHCLQDGYGVKQDVIEGRRFLVQANARELAAVLSNSNNKQPLLTWSINPVPNQPPQLRVISGSGCPLLSDFGCIIPVQEAHPANRFMTEWFSSRGGFPGPGMRLCSNTGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKFRHKVECAPVERWQDEEGEHVPGENDGGNLGEVVVLDS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03081 380 FunFam Predicted protein 297 354 - -
Trre5g03081 380 ProSiteProfiles Zinc finger MYND-type profile. 307 349 IPR002893 -
Trre5g03081 380 PANTHER MYND DOMAIN-CONTAINING 7 364 IPR044508 -
Trre5g03081 380 MobiDBLite consensus disorder prediction 359 380 - -
Trre5g03081 380 SUPERFAMILY F-box domain 29 88 IPR036047 GO:0005515
Trre5g03081 380 Pfam MYND finger 310 349 IPR002893 -
Trre5g03081 380 Gene3D - 299 354 - -
Trre5g03081 380 SUPERFAMILY HIT/MYND zinc finger-like 304 354 - -
Trre5g03081 380 Gene3D Tetratricopeptide repeat domain 86 240 IPR011990 GO:0005515
Trre5g03081 380 SUPERFAMILY HCP-like 106 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03081 Trre-Chr5 25894109 25895458 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03081 - - gmx:100798136 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03081 5 25894109 25895458 Trre7g04532 7 53311060 53312336 PCT