Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02753 ATGGATCCCAATCCAGGAACCTTCCCAATTCTCTCCTACGTCATGTCCCGTTTCCCTTCCTTATCATCCAAAACCACCATAACCTCCTCTTCCTCCGACGCCGAATTACACAACATCGAATTAAACGACATCGAACAACCATCTTCTCCACCTCATTCCCAAATCATAGGCCAAATGCCAAACCTAGCAAACCCTGAACTCATCCAATCTATGGCTCGAGCCATCTCCGAAGTTCATGCAGCTCGCTCCGTTCTTAACCTAATCGGCGAACGCCCGACTCACGAGGAAGTCGATCACGCCAAAGCCAAGCTGATCGACTTAGAAAGCCAGCTGTCACGACAGCTGGAAGGAATCGTGCTTCTATCGAGACCTCCGGAGATCGAGATCCATGATTGGAGAGCACATCTGGCGGAGAAAGAGAAACAGTGTAGAGAAGAAGCTGAAAAGGAGAAACAGATTTGGAAATCGCTTATTCAACTTGATGAGATGCATGAGGCTTATGAGAAGCTTCTTAAGGATGCTGAGAAACGATTGGTTAGAATGTATGATTCTGCTGAAGATGGTGATATTGGTGGTGTTGGTGGTGAGGCGAGTGAAGAGGTTGTCGGGATTCTGCAAGAAGCTGATGGGAAAGGAATTCAACGGATTGATCTTTCTGATAGGAACTTGAAGAATTTGCCGGAAGCTTTTGGCAGGATTCCTGGTTTGCTTGTGCTTAACGTTTCAGCTAATCAGCTTTCGGCAATTCCTGAGTCGATAGCTGGATTGCAAAATTTGGAGGAGCTTAATCTCTCTGCAAATCGTTTGGAATCACTTCCCGATTCAATTGGGTTACTACAAAAGTTGAAATTGCTCAATGTTTCTGGAAACAAGCTTACTGCCCTTCCTGATACCATTTGTCAGTGCAGGTCATTGGTGGAGCTGGATGTAAGCTTTAACGATCTGTCATACTTACCAACAAACATTGGGTATGAATTACCAAACTTGAAGAAACTCCTGATTCATTTGAACAAAATTCGATCTCTTCCCTTATCCATTTGTGAGCTGAAGTCGTTGCGCTATCTGGATGCTCATTTTAATGAGCTACATGGGCTTCCAAATGCAATTGGGAGACTGACTAACCTGGAAATTCTCAACCTGGGCAGTAACTTTGCTGATCTTAAAGAACTTCCAGAGACATTTGGTGAATTGACTAATCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCACTTCCCGATACATTTGGTTGTCTTGATAATTTGACGAAGCTCAACTTGGAACAAAATCCTCTTGAACTGCCACCAATGGAGATTGTAAATCAAGGGGTCCAAGCCATAAAGACTTTTATGATCAAGAGGTGGATTGATATGTTGCAAGAGGAAGAAAGAAAACACAACGTAGAAATGCAAGAACACGTAGAGGGTGGCTGGTTAACTCGAAGCACCTCGTGGTTGAAGAATGCTACTGGAAATGTGATTGGGTATATTGGAACTACTACTGCTTCTCCTATGTCACCCAAATCTCCCAGAGATGATGCTTATCTTAATCAGCAGTTATGA 1566 0.4361 MDPNPGTFPILSYVMSRFPSLSSKTTITSSSSDAELHNIELNDIEQPSSPPHSQIIGQMPNLANPELIQSMARAISEVHAARSVLNLIGERPTHEEVDHAKAKLIDLESQLSRQLEGIVLLSRPPEIEIHDWRAHLAEKEKQCREEAEKEKQIWKSLIQLDEMHEAYEKLLKDAEKRLVRMYDSAEDGDIGGVGGEASEEVVGILQEADGKGIQRIDLSDRNLKNLPEAFGRIPGLLVLNVSANQLSAIPESIAGLQNLEELNLSANRLESLPDSIGLLQKLKLLNVSGNKLTALPDTICQCRSLVELDVSFNDLSYLPTNIGYELPNLKKLLIHLNKIRSLPLSICELKSLRYLDAHFNELHGLPNAIGRLTNLEILNLGSNFADLKELPETFGELTNLRELDLSNNQIHALPDTFGCLDNLTKLNLEQNPLELPPMEIVNQGVQAIKTFMIKRWIDMLQEEERKHNVEMQEHVEGGWLTRSTSWLKNATGNVIGYIGTTTASPMSPKSPRDDAYLNQQL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02753 521 Gene3D Ribonuclease Inhibitor 316 385 IPR032675 -
Trre5g02753 521 Gene3D Ribonuclease Inhibitor 131 315 IPR032675 -
Trre5g02753 521 Coils Coil 157 184 - -
Trre5g02753 521 PRINTS Leucine-rich repeat signature 397 410 - -
Trre5g02753 521 PRINTS Leucine-rich repeat signature 259 272 - -
Trre5g02753 521 ProSiteProfiles Leucine-rich repeat profile. 399 420 IPR001611 GO:0005515
Trre5g02753 521 SUPERFAMILY L domain-like 212 433 - -
Trre5g02753 521 Gene3D Ribonuclease Inhibitor 386 449 IPR032675 -
Trre5g02753 521 PANTHER - 325 444 - -
Trre5g02753 521 ProSiteProfiles Leucine-rich repeat profile. 258 279 IPR001611 GO:0005515
Trre5g02753 521 SMART LRR_bac_2 349 368 - -
Trre5g02753 521 SMART LRR_bac_2 372 393 - -
Trre5g02753 521 SMART LRR_bac_2 302 321 - -
Trre5g02753 521 SMART LRR_bac_2 397 416 - -
Trre5g02753 521 SMART LRR_bac_2 326 345 - -
Trre5g02753 521 SMART LRR_bac_2 233 252 - -
Trre5g02753 521 SMART LRR_bac_2 256 275 - -
Trre5g02753 521 SMART LRR_bac_2 279 298 - -
Trre5g02753 521 MobiDBLite consensus disorder prediction 499 521 - -
Trre5g02753 521 SMART LRR_typ_2 233 255 IPR003591 -
Trre5g02753 521 SMART LRR_typ_2 303 325 IPR003591 -
Trre5g02753 521 SMART LRR_typ_2 326 349 IPR003591 -
Trre5g02753 521 SMART LRR_typ_2 372 396 IPR003591 -
Trre5g02753 521 SMART LRR_typ_2 279 302 IPR003591 -
Trre5g02753 521 SMART LRR_typ_2 397 419 IPR003591 -
Trre5g02753 521 SMART LRR_typ_2 420 443 IPR003591 -
Trre5g02753 521 SMART LRR_typ_2 256 278 IPR003591 -
Trre5g02753 521 FunFam Plant intracellular Ras-group-related LRR protein 9 139 317 - -
Trre5g02753 521 Pfam Leucine rich repeat 258 315 IPR001611 GO:0005515
Trre5g02753 521 Pfam Leucine rich repeat 374 433 IPR001611 GO:0005515
Trre5g02753 521 FunFam Plant intracellular Ras-group-related LRR protein 2 321 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02753 Trre-Chr5 21957909 21961013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02753 248 438 Receptor kinase-like Gene Family AT5G56040 32.735 3.14e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02753 - - gmx:100803823 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02753 5 21957909 21961013 Trre5g02753 5 21957909 21961013 ECH
Trre15g02924 15 25656979 25660050 Trre5g02753 5 21957909 21961013 PCT