Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre15g02924 | ATGGATCCCAATCCGGGGACCTTCCCCATTCTCTCCTATGTCATGTCCCGTCTTCAATCTTTGAGCCCTAGAGCTCATCATTCCCAATCTAAACCTGAATTCGACGTTGAAAAACCACACCCCTCAAATCCATCATCATCTTCGCCATCTTCAATCGTAGGCCAAATGCCGAATCTCACCGATCCCAAACTACTATCCTCCATGACCCGCGCTATCTCCGATGTCTCACAAGCTCGATCAGTCCTTAAACAAATCGGCGACCGTCCTACTCACGAACAAGTCGACATTGCCAAAGCCAAGTTGATCGACCTCGATGTTCATTTATCTCGTCAATTGGAAGAGATCATGAACCTCCCTCGACCTCCGGAGATCGACGAACAACAATGGCGGATTCACGTTAATGAAAGAGAGATGAAATGTAGAGAATCAGTTGAGAATGAGAGACGTGTTTATAAGTCTCTGTTACAAAAGGATGAAATGTTTGATGCTTATGAGAAGCTTCTTAAGAATGCTGAGTCGCGGCTTGTGAAGATTTATGAAGATGATGGTGATATTGGTGGTGAGATTAGTAACGGCGGTGATGTGGCTGAGGATGGTGAATGTCATGAACATATTGCGAGGATATTGCTGGAGGCGCGTGAAAAAGATGTTGATCGAGTCGAACTTACCGGGAAAAGGTTGAGAAGGATGCCGGAGGAATTTTGCAACATTGATTCATTGGTTTTGCTTAACCTCTCCACTAATCAGCTTTCGGTGATTCCTGACACAATAGCTGCATTGCAAAATCTTGAGGAGCTTAATATCTCTACAAATCTTTTGGGGTCACTTCCAGATTCAATTGGCTTGTTACAAAAGTTGAAAATCCTCAATGTCTCTGGAAATAAGTTGAGTTCCCTTCCTGATTCCATCAGTCAGTGCAGATCATTGGTTGAGCTGGATGCAAGCTTTAACAGTCTGACATATTTGCCAACAAACATTGGATACGAATTACAGAATTTACAGAAGCTCTTGGTTGGTTTAAACAAGATACGATCCTTTCCCTCATCCGTTTGTGAGATGAAGTCATTGCGCTATCTAGATGCCCGTTTTAATGAACTACATGGGCTTCCTCTTGCAGTTGGCAAATTGACTAGTCTTGAAGTTATCAACCTCAGTAATAACTTCAGTGACCTTAAAGAATTACCAGAGACATTTGGTGATTTGAGTAGCCTCAGGGAACTGGACCTTAGTAACAATCAAATACATGCACTTCCTGATACATTTGGCCGCCTTGATAGTTTAATCAAGCTAAACTTGGAGCAGAACCCTATTGAATTGCCACCTATGGAGGTTGTAAATGAAGGTGTCCAAGCCATCAAGTCTTACATGACCGAGAGGTGGTTAGATATATTGGCAGAGGAAGAGAAGAAAAAAATACATGAATCGCAAGAAGGACAGAGTGGTTGGTTAAATCGAAGTACCTCCTGGTTGAAGAACGTTTCTGAAAATGTAACCGAGTATATTGGAAGTACTATGTCCCCCAAAACTCCCAAATCTCCCAGAACTCCCAGAACTCCAAGAACTCCCAAAGATAATTTTCTTGATCAGCAACTATGA | 1596 | 0.4254 | MDPNPGTFPILSYVMSRLQSLSPRAHHSQSKPEFDVEKPHPSNPSSSSPSSIVGQMPNLTDPKLLSSMTRAISDVSQARSVLKQIGDRPTHEQVDIAKAKLIDLDVHLSRQLEEIMNLPRPPEIDEQQWRIHVNEREMKCRESVENERRVYKSLLQKDEMFDAYEKLLKNAESRLVKIYEDDGDIGGEISNGGDVAEDGECHEHIARILLEAREKDVDRVELTGKRLRRMPEEFCNIDSLVLLNLSTNQLSVIPDTIAALQNLEELNISTNLLGSLPDSIGLLQKLKILNVSGNKLSSLPDSISQCRSLVELDASFNSLTYLPTNIGYELQNLQKLLVGLNKIRSFPSSVCEMKSLRYLDARFNELHGLPLAVGKLTSLEVINLSNNFSDLKELPETFGDLSSLRELDLSNNQIHALPDTFGRLDSLIKLNLEQNPIELPPMEVVNEGVQAIKSYMTERWLDILAEEEKKKIHESQEGQSGWLNRSTSWLKNVSENVTEYIGSTMSPKTPKSPRTPRTPRTPKDNFLDQQL | 531 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre15g02924 | 531 | SMART | LRR_typ_2 | 376 | 400 | IPR003591 | - | |
| Trre15g02924 | 531 | SMART | LRR_typ_2 | 330 | 353 | IPR003591 | - | |
| Trre15g02924 | 531 | SMART | LRR_typ_2 | 237 | 259 | IPR003591 | - | |
| Trre15g02924 | 531 | SMART | LRR_typ_2 | 401 | 424 | IPR003591 | - | |
| Trre15g02924 | 531 | SMART | LRR_typ_2 | 283 | 306 | IPR003591 | - | |
| Trre15g02924 | 531 | SMART | LRR_typ_2 | 307 | 329 | IPR003591 | - | |
| Trre15g02924 | 531 | SMART | LRR_typ_2 | 260 | 282 | IPR003591 | - | |
| Trre15g02924 | 531 | MobiDBLite | consensus disorder prediction | 500 | 531 | - | - | |
| Trre15g02924 | 531 | MobiDBLite | consensus disorder prediction | 21 | 62 | - | - | |
| Trre15g02924 | 531 | ProSiteProfiles | Leucine-rich repeat profile. | 403 | 424 | IPR001611 | GO:0005515 | |
| Trre15g02924 | 531 | SMART | LRR_bac_2 | 401 | 420 | - | - | |
| Trre15g02924 | 531 | SMART | LRR_bac_2 | 260 | 279 | - | - | |
| Trre15g02924 | 531 | SMART | LRR_bac_2 | 237 | 256 | - | - | |
| Trre15g02924 | 531 | SMART | LRR_bac_2 | 306 | 325 | - | - | |
| Trre15g02924 | 531 | SMART | LRR_bac_2 | 283 | 302 | - | - | |
| Trre15g02924 | 531 | SMART | LRR_bac_2 | 376 | 397 | - | - | |
| Trre15g02924 | 531 | SMART | LRR_bac_2 | 330 | 349 | - | - | |
| Trre15g02924 | 531 | SMART | LRR_bac_2 | 353 | 372 | - | - | |
| Trre15g02924 | 531 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING | 225 | 327 | - | - | |
| Trre15g02924 | 531 | SUPERFAMILY | L domain-like | 217 | 437 | - | - | |
| Trre15g02924 | 531 | MobiDBLite | consensus disorder prediction | 40 | 62 | - | - | |
| Trre15g02924 | 531 | Gene3D | Ribonuclease Inhibitor | 329 | 459 | IPR032675 | - | |
| Trre15g02924 | 531 | Gene3D | Ribonuclease Inhibitor | 124 | 321 | IPR032675 | - | |
| Trre15g02924 | 531 | FunFam | Plant intracellular Ras-group-related LRR protein 4 | 194 | 459 | - | - | |
| Trre15g02924 | 531 | Pfam | Leucine rich repeat | 262 | 319 | IPR001611 | GO:0005515 | |
| Trre15g02924 | 531 | Pfam | Leucine rich repeat | 378 | 437 | IPR001611 | GO:0005515 | |
| Trre15g02924 | 531 | ProSiteProfiles | Leucine-rich repeat profile. | 262 | 283 | IPR001611 | GO:0005515 | |
| Trre15g02924 | 531 | ProSiteProfiles | Leucine-rich repeat profile. | 285 | 306 | IPR001611 | GO:0005515 | |
| Trre15g02924 | 531 | Coils | Coil | 161 | 181 | - | - | |
| Trre15g02924 | 531 | PRINTS | Leucine-rich repeat signature | 286 | 299 | - | - | |
| Trre15g02924 | 531 | PRINTS | Leucine-rich repeat signature | 401 | 414 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre15g02924 | Trre-Chr15 | 25656979 | 25660050 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre15g02924 | 220 | 442 | Receptor kinase-like Gene Family | AT5G56040 | 31.071 | 5.55e-14 | 73.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre15g02924 | - | - | gmx:100782818 | 699.123 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre15g02924 | 15 | 25656979 | 25660050 | Trre15g02924 | 15 | 25656979 | 25660050 | ECH | |
| Trre15g02924 | 15 | 25656979 | 25660050 | Trre5g02753 | 5 | 21957909 | 21961013 | PCT |