LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02739	ATGGCCTCAGCTTCGAAAAAGACGACGCCACCATCGTCTTCTCCTTGTTGTCCCTCTGTCGACTCTCCCCGCTTAGCCGTCGCTGCTACCTCCGCCGTCGTCCAATCCGATCGCGTTCCTAACAACTCCGTTGCCTTGATTCGTCCTCTCGATTCGCTTCCAGAACCTTCCACCACCAATGCTCCTTCTGCTAAGGGAATCATTTCAATGACAAGGCCTCAGTCAAGCCATCCTTTGGACCCGTTAACTGCGGCGGAAATTTCTGTGGCAGTGGCAACTGTGAGGGCTGCTGGAGCCACTCCAGAGCTTAGAGATAGTATGCGCTTCATTGAAGTAGTTTTGCTGGAACCAGATAAACATGTTGTTGCACTGGCAGATGCTTATTTTTTTCCACCTTTCCAACCATCATTACTTCCTAGAAGTAAAGGAGGGCCTGTAATTCCCACAAAACTCCCTCCAAGATGTGCTAGACTTGTTGTTTACAATAAGAAATCAAATGTGACTGCTCTGTGGATTGTCGAATTATCACAAGTGCATGCTGTAACTCGAGGTGGCCATCATCGAGGAAAAGTAATTTCATCACGTGTTGTTCCCGATGTTCAGCCTCCAATGGATGCTGAGGAATACGCAGAATGCGAGGCTGTTGTTAAAAGTTTCCCCCCTTTTATAGAGGCTATGAAGAAAAGGGGTATTGAAGACATGGACCTTGTAATGGTTGACCCCTGGTGTGTTGGTTATCATAGTGAAGCCGATGCTCCTGGTCGAAGACTTGCTAAACCTCTCCTATTTTGTCGATCTGAGAGTGACTGCCCTATGGAAAATGGTTATGCCCGCCCAGTTGAGGGCATCTATGTTCTTGTTGATATGCAAAACATGAAGGTGATAGAGTTCGAAGACCGTAAACTTGTTCCTCTGCCTCCAGTTGATCCCTTAAGGAACTATACTCCTGGTGAATCCAGAGGTGGCTCCGATAGAAGTGATGTCAAACCCTTACAAATTATTCAACCTGAAGGTCCAAGCTTTCGTGTCAATGGGCATTATGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACACCCAAAGAAGGGTTGGTTATATATTCTGTTGCGTATGTTGATGGTAGTCGAGGGAGAAGGCCTGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTACCCTATGGAGATCCAAATGAACCTCATTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCACATTCCCTCAAGAAGGGATGTGATTGTTTGGGCTACATCAAATATTTTGATGCTCACTTTACAAATTTCACTGGTGGAGTGGAAACCATTGAAAATTGTGTATGTATGCATGAAGAGGATCATGGGATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTGGCAGAAGTCCGGAGGTCTAGAAGACTTTCAGTTTCTTTTGTATGCACGGTGGCCAACTATGAGTATGCATTTTTTTGGCACTTTTATCAGGATGGAAAGATTGAAGCTGAAGTCAAGCTGACTGGAATTCTCAGCTTAGGTGCCTTGATGCCAGGAGAATATCGAAAATATGGAACCATGATAGCACCAGGTCTATATGCTCCAGTTCATCAACACTTTTTCGTTGCTCGCATGGACATGTCTGTTGATTCTAGACCCGGTGAAGCTTTGAATCAGGTTGTGGAGGTCAATATGAAAGTTGAAGAACCTGGTGAGAATAATATTCATCACAATGCATTCTATGCCGAAGAGACTTTGCTCAGATCTGAATCAGAAGCAGTGCGTGATTGCAATCCTTTAACTGCTCGACATTGGATTGTAAGGAACACAAGAACTGGCAACAGAACCGGACAATTGACAGGCTACAAGCTGGTACCAGGCTCAAACTGCTTGCCATTGGCAGGTTCTGAGGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATGTTTGGACTAACTGTGTTATCTTCAGGTATGTATTTGGAATCACGCATGTTCCTCGTCTAGAAGACTGGCCTGTTATGCCAGTAGAACACATTGGTTTTATGCTCATGCCTCATGGATTCTTCAATTGTTCTCCTGCAGTAGATGTCCCACCTAATTCATGTGAAGTGGAATCTAAAGACACCGACATCAAGGATAATGGTGCTTCGAAGCCAATTCAGAGTGGTTTAGCATCAAAGCTTTAG	2211	0.4464	MASASKKTTPPSSSPCCPSVDSPRLAVAATSAVVQSDRVPNNSVALIRPLDSLPEPSTTNAPSAKGIISMTRPQSSHPLDPLTAAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKHVVALADAYFFPPFQPSLLPRSKGGPVIPTKLPPRCARLVVYNKKSNVTALWIVELSQVHAVTRGGHHRGKVISSRVVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYHSEADAPGRRLAKPLLFCRSESDCPMENGYARPVEGIYVLVDMQNMKVIEFEDRKLVPLPPVDPLRNYTPGESRGGSDRSDVKPLQIIQPEGPSFRVNGHYVEWQKWNFRIGFTPKEGLVIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCMHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFVCTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALMPGEYRKYGTMIAPGLYAPVHQHFFVARMDMSVDSRPGEALNQVVEVNMKVEEPGENNIHHNAFYAEETLLRSESEAVRDCNPLTARHWIVRNTRTGNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNVWTNCVIFRYVFGITHVPRLEDWPVMPVEHIGFMLMPHGFFNCSPAVDVPPNSCEVESKDTDIKDNGASKPIQSGLASKL	736

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g02739	736	SUPERFAMILY	Amine oxidase catalytic domain	325	707	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	Pfam	Copper amine oxidase, N2 domain	77	166	IPR015800	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	FunFam	Amine oxidase	207	310	-	-
	Trre5g02739	736	Pfam	Copper amine oxidase, N3 domain	202	305	IPR015802	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	Gene3D	Copper amine oxidase, catalytic domain	318	660	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	FunFam	Amine oxidase	321	661	-	-
	Trre5g02739	736	MobiDBLite	consensus disorder prediction	713	736	-	-
	Trre5g02739	736	MobiDBLite	consensus disorder prediction	1	19	-	-
	Trre5g02739	736	MobiDBLite	consensus disorder prediction	1	21	-	-
	Trre5g02739	736	FunFam	Amine oxidase	61	204	-	-
	Trre5g02739	736	SUPERFAMILY	Amine oxidase N-terminal region	75	203	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	SUPERFAMILY	Amine oxidase N-terminal region	201	318	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	Gene3D	Copper amine oxidase, catalytic domain	661	729	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	PANTHER	COPPER AMINE OXIDASE	72	658	IPR000269	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	Gene3D	-	206	309	-	-
	Trre5g02739	736	Pfam	Copper amine oxidase, enzyme domain	666	702	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	Pfam	Copper amine oxidase, enzyme domain	331	658	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Trre5g02739	736	Gene3D	-	63	204	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02739	Trre-Chr5	21839351	21845675	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02739	K00276		-	gmx:100798722	1279.23

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g02739	5	21839351	21845675	Trre5g02739	5	21839351	21845675	ECH
	Trre15g02915	15	25504336	25506111	Trre5g02739	5	21839351	21845675	PCT