Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02730 ATGGCCAAGATTCCCAACACTGGAGTATTCTCTTCAAGACACTTGTTGATGTTATCACTAGCTTTAAATGTGAGCTTGATACTGAAAATAGTGTATGAAGGTGAAGAAGTTCATAATAATAACAACAACTCTTGTTTGAAAAATGAAAGAGGAACTTCAATTGCTGCTAGAGCTAGAGCTGATTTTCACAAATCACGAGTTGTTATGTCAACAACTTCGTCTTTGTCGAATTCTACTTGCACAGATCTTACAAGAGGAAACAACAGAATAATCAATTTAGACCATGGGGATCCGACAGTATATGAAAGATATTGGCGACAAACGGGTGACAAGACGACGATTATAATTCATGGATGGCAATCCATGAGTTATTTTTCTGATGTATCCAACATATGCTGGTTTCTTGAGCCAGAATTTGCAAAGGAGGTTGTGAGGTTACACAGATTGGTCGGGAATGCAGTCACAGATGGACGTCACATTGTTGTAGGGACAGGTTCCTCTCAACTTTTTCTTGCTGCACTCTATGCTCTCTCCCCATCTCATTCTTCTCAACCAATCAACGTTGTCTGTGCCACACCCTACTACTCTTCATATCCATCAATGACAGATTATCTAAAATCTGGGCTATACAAATGGGCCGGTGATGCAGATAGTTATGAGAAAGATGGTCCCTACATTGAGCTGGTAACTTCACCAAATAATCCTGATGGACATGTGAGAAAGTCTAGGGTCAATAGAAGTCAGGGACTTCTTGTTCATGATCTTGCATATTACTGGCCGCAGTATACTCCTATATCATCACCTGCTGATCATGATCTAACTCTTTTTACTGTCTCCAAAAGTACAGGTCATGCAGGAATGCGCATAGGGTGGGCTTTGGTCAAAGACAAAGAAGTAGCAAAGAAAATGACCAAGTTCATAGAGCTCAACACAATAGGAGTCTCAAAGGATTCACAACTCAGGGCTGCTAAGGTTTTAAGAGCGGTTTCTGACAGCTGTGAACAAGAAAACTATCAAGAGGGCGATTCATTCTTCAAGTTCAGCCACAAGCTCATGACCAACAGGTGGAAGCTGCTAAGAGAAGTAGTGCAACATAGTGAATTGTTCAGTTTGCCCCAATTTTCTCCTGCTTTTTGCAACTTTTTCAATCAAGTGTTGGAACCTCAACCAGCTTTTGTATGGTTAAAGTGTGAGGGAAATGTGGAAGACTGTGAAAGCTTCCTTAGAGTACACAACATCATAACAAGAAGTGGAAAACACTTTGGGGTTAGCCCAAAATATGTAAGAATTAGCTTGTTGGATATTGATGAAAATTTTACTCAATTTCTAGACAGACTATCTACCATACAGTCTATGTAA 1359 0.4003 MAKIPNTGVFSSRHLLMLSLALNVSLILKIVYEGEEVHNNNNNSCLKNERGTSIAARARADFHKSRVVMSTTSSLSNSTCTDLTRGNNRIINLDHGDPTVYERYWRQTGDKTTIIIHGWQSMSYFSDVSNICWFLEPEFAKEVVRLHRLVGNAVTDGRHIVVGTGSSQLFLAALYALSPSHSSQPINVVCATPYYSSYPSMTDYLKSGLYKWAGDADSYEKDGPYIELVTSPNNPDGHVRKSRVNRSQGLLVHDLAYYWPQYTPISSPADHDLTLFTVSKSTGHAGMRIGWALVKDKEVAKKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSCEQENYQEGDSFFKFSHKLMTNRWKLLREVVQHSELFSLPQFSPAFCNFFNQVLEPQPAFVWLKCEGNVEDCESFLRVHNIITRSGKHFGVSPKYVRISLLDIDENFTQFLDRLSTIQSM 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02730 452 Gene3D - 33 131 IPR037029 GO:0016846
Trre5g02730 452 Pfam Allinase 91 449 IPR006948 GO:0016846
Trre5g02730 452 SUPERFAMILY PLP-dependent transferases 89 447 IPR015424 -
Trre5g02730 452 Gene3D Aspartate Aminotransferase, domain 1 342 450 IPR015422 GO:0003824
Trre5g02730 452 Gene3D - 136 339 IPR015421 GO:0003824
Trre5g02730 452 CDD AAT_like 137 446 - -
Trre5g02730 452 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 93 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02730 Trre-Chr5 21715681 21723166 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02730 K16903 - gmx:100807013 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02730 5 21715681 21723166 Trre5g02730 5 21715681 21723166 ECH
Trre15g02910 15 25405446 25413179 Trre5g02730 5 21715681 21723166 PCT