Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02910 ATGATGGCGAATCTTCCTGCTATGCTTTCTTTGAAGCATTTTTTGGTGTTATCGTTGGCTTTGAATGTTAGTTTAATTCTGAGAATGGTGTATGAGGCTGATCAAGAGGGAAGTAACAGCAACAAAATAGAAGGGTATAATCGGATTATTGAAAAATCACGTTTGGCTATATCTTCTATAACTTCTTTTGCTAATTCTACTCGTAAACATCATTCGGGAATCATGGATAAAGTCATCAACCTTGATCATGGAGATCCAACAATGTACGAACAATTTTGGCGACAAATGGGAGACAAGACAACAATAATAATTCCAGGATGGCAATCTTTGAGTTATTTTTCTGATCCAACAAGCATATGTTGGTTTCTTGAACCAGAATTTGCGAAGGAAGTAGTGAGGTTACACAATGTTGTTGGAAATGCAGTGACACAAGGTCGTCACATTGTTGTTGGAACAGGTTCATCTCAGTTGATTCTAGCTGCTCTTTATGCTCTTTCTTCTCCTCATGCTTCTCAACCCATCAGCGTTGTTTCTGCCGTACCTTATTACTCGTCGTATCCATCAATGACAGATTACCAGAAATCAGGACTTTACAAATGGGGTGGTGATGCAGAGACTTTTAACAAAGATGAGCCTTACATTGAGCTGGTTACTTCTCCAAATAACCCTGATGGATATATAAGGCAATCAATAGTGAACCGAAACCAAGGACTATTAGTTCATGACCTTGCTTATTACTGGCCACAATACACTCCAATATTATCTGCTACAGATTATGATCTTACTCTTTTCACTGTCTCGAAACTCACTGGTCACGCTGGAATGCGCATAGGGTGGGCTCTTGTCAAAGACCCTGAAGTAGCAAAGAAAATGACTAAATTCATAGAGCTAAATACAATTGGTGTCTCCAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTGAAAACCGTTTCTGACAGCTGCGAAGAAGAAAAATCCAAAGATGGAGAAGAATCCTTTTTCAAGTACAGCTACAGGATGATGGAGCAAAGGTGGAAGCTACTAAGAGAAGCAGTTGATAGCGGTGATTTATTCAGTTTGCCGAAATTTTCTTCTGGATTTTGCAACTTTCTCAATCAAGAGTCGGAAACTCTACCAGCATTTGCTTGGTTGAAGTGTGAAGGGGATATAGAGGACTGTGAAAGTTTCCTTCGTGGACACAAGATTTTGACTAGAGGTGGTAAACAATTTGGGGCTAGCCCAAAATATGTAAGAATTAGCATGCTGGATACAGATGATAATTTTATGCATTTAATAGATAGGTTATCTACCATACAAACCAAACAGCAGCAGTGA 1335 0.3925 MMANLPAMLSLKHFLVLSLALNVSLILRMVYEADQEGSNSNKIEGYNRIIEKSRLAISSITSFANSTRKHHSGIMDKVINLDHGDPTMYEQFWRQMGDKTTIIIPGWQSLSYFSDPTSICWFLEPEFAKEVVRLHNVVGNAVTQGRHIVVGTGSSQLILAALYALSSPHASQPISVVSAVPYYSSYPSMTDYQKSGLYKWGGDAETFNKDEPYIELVTSPNNPDGYIRQSIVNRNQGLLVHDLAYYWPQYTPILSATDYDLTLFTVSKLTGHAGMRIGWALVKDPEVAKKMTKFIELNTIGVSKDSQLRAAKVLKTVSDSCEEEKSKDGEESFFKYSYRMMEQRWKLLREAVDSGDLFSLPKFSSGFCNFLNQESETLPAFAWLKCEGDIEDCESFLRGHKILTRGGKQFGASPKYVRISMLDTDDNFMHLIDRLSTIQTKQQQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02910 444 Gene3D Aspartate Aminotransferase, domain 1 330 439 IPR015422 GO:0003824
Trre15g02910 444 SUPERFAMILY PLP-dependent transferases 71 437 IPR015424 -
Trre15g02910 444 Gene3D - 57 119 IPR037029 GO:0016846
Trre15g02910 444 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 77 437 - -
Trre15g02910 444 Pfam Allinase 79 438 IPR006948 GO:0016846
Trre15g02910 444 CDD AAT_like 125 435 - -
Trre15g02910 444 Gene3D - 124 327 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02910 Trre-Chr15 25405446 25413179 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02910 K16903 - gmx:100818522 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02910 15 25405446 25413179 Trre15g02910 15 25405446 25413179 ECH
Trre15g02910 15 25405446 25413179 Trre5g02730 5 21715681 21723166 PCT