Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02720 ATGAAGGCAACACTAAAATACTTAGCAGGAATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCTGAGCAAGTTACTCAAAATTGTTCTCCATTCCTTCCTTCCAATCTAACCGCTCTCATCACTGGTGCCAGTTCTGGAATTGGAGGTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGCAAGGGACTTGAAGAAGGCAAGGGAAGTGAGAGACAATATTCAAAAAGAGAGTCCAAAAGCTGAGGTTATTTTGTTGGAGATTGATCTTAGTTCTTTTTGTTCTGTACAAAGATTTTGTTCTGAGTTTTTAGCTTTAGATCTTCCACTTAATATTCTAATAAACAATGCAGGAATATTCTCTCAAGATTTGGAGTTCTCTGAAGAGAAAATTGAGATTACATTTGCCACAAATTACTTGGGACATTTTTTGTTAACAGAAATCTTACTAGACAAAATGATAGAAACAGCAGAGAAGACAAGTATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAGACATGGTTTTTGTTTCAAAGACATACTCAATGGAAAAAACTACAATGGAACACAAGCTTATGCTCAATCAAAATTGGCAAATATTTTGCATGCCAAAGAAATAGCTAGACAACTCAAGGAAAGAAATGCAAGAGTAACTATAAATGCAGTTCATCCAGGTATTGTAAAGACAGGAATTATTAAAGCTCACAAGGGCTTAATAACAGATTCCTTATTTTTCATTGCATCAAAATTACTCAAATCCATATCGCAGGGCGCATCAACGACATGTTATGTGGCTTTGAGTCCAAAAATAGAAGGGATAAGTGGAAAATACTTTACTGATTGCAACGAGAGTAAGTGTTCTCGCTTAGCAAATGATGAATCAGAAGCTCAAAAGTTATGGAACAACACTCATGCCTTGCTTCACAAACGACTCCATCAAGCAACAATTTGA 993 0.3666 MKATLKYLAGIAGPSGFGSNSTAEQVTQNCSPFLPSNLTALITGASSGIGGETARVLAKRGVRVVIGARDLKKAREVRDNIQKESPKAEVILLEIDLSSFCSVQRFCSEFLALDLPLNILINNAGIFSQDLEFSEEKIEITFATNYLGHFLLTEILLDKMIETAEKTSIQGRIINVSSVIHSWVKRHGFCFKDILNGKNYNGTQAYAQSKLANILHAKEIARQLKERNARVTINAVHPGIVKTGIIKAHKGLITDSLFFIASKLLKSISQGASTTCYVALSPKIEGISGKYFTDCNESKCSRLANDESEAQKLWNNTHALLHKRLHQATI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02720 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Trre5g02720 330 Gene3D - 35 326 - -
Trre5g02720 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Trre5g02720 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 299 IPR036291 -
Trre5g02720 330 PANTHER RETINOL DEHYDROGENASE 14 320 - -
Trre5g02720 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Trre5g02720 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Trre5g02720 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Trre5g02720 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Trre5g02720 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Trre5g02720 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Trre5g02720 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Trre5g02720 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02720 Trre-Chr5 21617274 21620732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02720 19 248 Acyl Lipid Metabolism Gene Families AT1G63380 28.992 1.60e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02720 - - gmx:100801384 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02720 5 21617274 21620732 Trre5g02720 5 21617274 21620732 ECH
Trre15g02903 15 25308557 25311295 Trre5g02720 5 21617274 21620732 PCT