Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02903 ATGAAGGAAACAATAAGGTACTTAGCAGGCATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCAGAACAAGTTACTCAACATTGCTCTTTTCTACCTTCAAATCTAACTGCTCTCATCACTGGTGCCACTTCAGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAAAAAGGAGTGAGAGTTGTGGTTGGTGCTAGAGACATGAAAAAGGCTATGAAAGTGAGAGAAAAAATCCAACAAGAGTGTCCTAATGCTGAGGTTATTCTATTGGAGATTGATCTTAGTTCTCTTGCTTCTGTAAAGAGATTTTGTTCTGAGTTTTTAGCTTTAGATTTGCCTCTTAATATTCTCATAAACAATGCTGGAGTGTACTCTCAGAACCTGGAATTCTCTGAAGAGAAAATTGAATTGACATTTGCTACAAATTATTTAGGACATTTTTTGTTGACAAAAATGTTACTAGAGAAAATGATAGATACTGCAAACAAGACAGGAATTCAAGGAAGAATAATAAATGTGTCTTCGGTAATTCATAGCTGGGTGAAAAGATCTTGCTTTAGTTTCAAAGACATGCTCAGTGGAAAAAATTACAATGGGACACGTGCATATGCTCAATCAAAATTTGCCATGATTCTGCATGTGAAGGAAATGGATAGACAACTAAAGGCAAGGAATGCAAGAGTAACTATTAATGCAGTGCATCCAGGCATTGTGAGGACAGGAATTATAAGAGCACATAAGGGCTTAATACAGGATTCCTTCTTTTTCATTGCATCAAAGCTGCTCAAAACAATATCACAGGGTGCATCAACGACATGTTATGTTGCTCTAAGCCAACAGATAGAAGGGGTGAGTGGGAAATACTTTACTGATTGCAATGAGAGTAACTGCTCAAGTTTTGCAAAGGACGAATCAGAAGCTAAAAAACTATGGAACAATACAAGTACCTTACTTCACAAACGCCTAAGGGCGTGTTTGGATTGGCGGTGA 996 0.3805 MKETIRYLAGIAGPSGFGSNSTAEQVTQHCSFLPSNLTALITGATSGIGAETARVLAKKGVRVVVGARDMKKAMKVREKIQQECPNAEVILLEIDLSSLASVKRFCSEFLALDLPLNILINNAGVYSQNLEFSEEKIELTFATNYLGHFLLTKMLLEKMIDTANKTGIQGRIINVSSVIHSWVKRSCFSFKDMLSGKNYNGTRAYAQSKFAMILHVKEMDRQLKARNARVTINAVHPGIVRTGIIRAHKGLIQDSFFFIASKLLKTISQGASTTCYVALSQQIEGVSGKYFTDCNESNCSSFAKDESEAKKLWNNTSTLLHKRLRACLDWR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02903 331 Pfam short chain dehydrogenase 38 179 IPR002347 -
Trre15g02903 331 Pfam short chain dehydrogenase 196 245 IPR002347 -
Trre15g02903 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 297 IPR036291 -
Trre15g02903 331 Gene3D - 33 325 - -
Trre15g02903 331 PANTHER RETINOL DEHYDROGENASE 14 319 - -
Trre15g02903 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Trre15g02903 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Trre15g02903 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 224 IPR002347 -
Trre15g02903 331 CDD retinol-DH_like_SDR_c_like 38 313 - -
Trre15g02903 331 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Trre15g02903 331 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Trre15g02903 331 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Trre15g02903 331 PRINTS Glucose/ribitol dehydrogenase family signature 205 224 IPR002347 -
Trre15g02903 331 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02903 Trre-Chr15 25308557 25311295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02903 40 293 Acyl Lipid Metabolism Gene Families AT1G63380 27.985 4.83e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02903 - K11153 gmx:100819058 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02903 15 25308557 25311295 Trre15g02903 15 25308557 25311295 ECH
Trre15g02903 15 25308557 25311295 Trre5g02720 5 21617274 21620732 PCT