Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02678 ATGCCGGGAATTGTTACAAATGGGGTTCATGATGAAGGGGGAAGTAATGGGGTGAATGGGAATCAATCCCCTGCTAAGGAAACCGTAACTCTAATCAAGTCTCCGAGGAGTTCAATGGGTTCGCAGAGACGTCAAAGTGCTGGTCCTAATTTACCGGTTGATGAGGTGGGCGAGCCTTCGATCGAGCAGTTATATGAAAATGTGTGTGATATGCAGAGTTCTGATCAGTCTCCCTCAAGGCAAAGTTTTGGATCTGATGGCGATGAGTCTAGAATTGATTCGGAATTGCACCATCTAGTTGGAGGGAGGATGAGGGAGTTGGAGATAATGGAAGAGGAGGTGGAGGTGGAGGTGGAGGTGGAGAGAAGGCCGGGAGAGAGTTCTAGCGGTGAAACATCTTCTGGAATTGGTAGTTTATCCAATGGTAAGAAGTTGGATAAGGTGGCTGTGGTTCGATCTGGTAGTAAAAGTCCGGTTTCCTCCGAAAAATCCGTCAAAGCTTTGAATTCACCGATAGGCTCTGACACTTCACCAAAATCAAAACCTAAAGGAACTGACAGTTCACCCAAATCAAAACCCAAAGGAAAAAGTCCTGCAAAACCTCCTCTACTGAAAAAGAATGGTAGTCCTCTGAGAAAACAAACTAGCGGAGTTAATGGCGTGAAGAATTTAAACAATTCTCCTTTGAGAAAGTCAGTTTCACAGAATCACATTGACAGTTCAGTTGAATCAGGATTAGATAGACCAGATCGGGCACCAATATTACTAAAGCAAGCAAGAGATCTTATGTCATCAGGAGATAATCCACAAAAAGCTCTTGAATTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTTGATAATGGCAAACCGAGTTTGGAACTGGTCATGTGTTTACATGTTACAGCAGCAATATATTGCAGCTTGGGTCAATACAACGAGGCGATTCCGATGCTTGAGCGTTCAATTGAGATTCCTGATACCGGGGAAAGTCAACAGCATGCTCTTGCTAAATTTGCCGGTCACATGCAACTGGGAGACACCTATGCTATGTTGGGCCAACTTGAGAATTCAATTATGTGCTACACTGCTGGTTTTGAAGTTCAGAGAGGGATTTTGGGAGAGACAGACCCGAGAGTTGGTGAAACTTGTCGGTATTTGGCCGAAGCTAATGTTCAAGCTTTGCAATTTAATGAAGCAGAGAGGCTCTGTCAAATGGCTCTTGACATTCATAGAGAAAATAGTTCAGCCCCATCTATTGAAGAGGCAGCCGATAGGAGGCTTATGGGCCTTATATGTGAAACAAAGGGGAATCATGAAGCAGCTCTTGAACACCTTGTTTTAGCCAGCATGGCAATGGTAGCGAATGACCAGGAAGTAGAAGTTGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGACTCGATATGATGAGGCTATCTTCGCATATGAAAAAGCTCTAACTGTTTTCAAGACCAACAAAGGAGAAAATCATCCAACAGTGGGATCGGTCTTTGTACGTTTGGCTGACTTGTATAACAGGATAGGGAAGATAAGGGAATCAAAATCATATTGCGAGAGTGCTCTTAAAATATATGAGAATCCAATGCCTGGAGTTACTCCAGAGGAGATTGCTAGCGGTCTTACGAATCTATCAACCATCTATGAGTCAATGAATGAGGTTGAACATGCACTCAAGTTACTGCAGAAAGCACTGGAGATATATAATGATGCCCCTGGTCAGCAAGGCACAATAGCAGGAATCGAAGCTCAGATAGGAGTCATGTACTACACCTTGGGCAACTATTCTGAATCTTACAACACCTTGAAAAATGCTATTTCGAAGCTTCGTGCTATTGGAGAGAAGAAATCATCCTTTTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAGAGTTATGCTTTAAGTGAGGCTATAGTATTATTCGAGGAAGCAAAGAGTATTTTGGAACAGGAGTTGGGACCTTATCACCCTGACACACTTGGAGTATATAGTAATCTTGCAGGCACATATGATGCAATTGGCAGGCTTGATGATGCAATTCAAATTTTGGAGCATGTTGTTAGTATGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGATGATGAGAAGAGAAGGTTGAGCGAGTTATTGAAGGAAACAGGTAGAGTTCGGAGCAGAAAAGTCAGGTCACTAGAGAACCTTTTTGACGGAAATGCTCGCACTTTAAACAACCTTGTCATCAAGACCTGA 2274 0.4305 MPGIVTNGVHDEGGSNGVNGNQSPAKETVTLIKSPRSSMGSQRRQSAGPNLPVDEVGEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVEVERRPGESSSGETSSGIGSLSNGKKLDKVAVVRSGSKSPVSSEKSVKALNSPIGSDTSPKSKPKGTDSSPKSKPKGKSPAKPPLLKKNGSPLRKQTSGVNGVKNLNNSPLRKSVSQNHIDSSVESGLDRPDRAPILLKQARDLMSSGDNPQKALELALQAMKLFEKFDNGKPSLELVMCLHVTAAIYCSLGQYNEAIPMLERSIEIPDTGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTAGFEVQRGILGETDPRVGETCRYLAEANVQALQFNEAERLCQMALDIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANDQEVEVASVDCSIGDTYLSLTRYDEAIFAYEKALTVFKTNKGENHPTVGSVFVRLADLYNRIGKIRESKSYCESALKIYENPMPGVTPEEIASGLTNLSTIYESMNEVEHALKLLQKALEIYNDAPGQQGTIAGIEAQIGVMYYTLGNYSESYNTLKNAISKLRAIGEKKSSFFGIALNQMGLACVQSYALSEAIVLFEEAKSILEQELGPYHPDTLGVYSNLAGTYDAIGRLDDAIQILEHVVSMREEKLGTANPDVDDEKRRLSELLKETGRVRSRKVRSLENLFDGNARTLNNLVIKT 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02678 757 ProSiteProfiles TPR repeat profile. 548 581 IPR019734 GO:0005515
Trre5g02678 757 SUPERFAMILY TPR-like 270 709 IPR011990 GO:0005515
Trre5g02678 757 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 44 747 - -
Trre5g02678 757 Gene3D Tetratricopeptide repeat domain 451 630 IPR011990 GO:0005515
Trre5g02678 757 MobiDBLite consensus disorder prediction 209 242 - -
Trre5g02678 757 SMART tpr_5 463 496 IPR019734 GO:0005515
Trre5g02678 757 SMART tpr_5 673 706 IPR019734 GO:0005515
Trre5g02678 757 SMART tpr_5 296 329 IPR019734 GO:0005515
Trre5g02678 757 SMART tpr_5 505 538 IPR019734 GO:0005515
Trre5g02678 757 SMART tpr_5 631 664 IPR019734 GO:0005515
Trre5g02678 757 SMART tpr_5 339 372 IPR019734 GO:0005515
Trre5g02678 757 SMART tpr_5 589 622 IPR019734 GO:0005515
Trre5g02678 757 SMART tpr_5 548 581 IPR019734 GO:0005515
Trre5g02678 757 SMART tpr_5 381 414 IPR019734 GO:0005515
Trre5g02678 757 Coils Coil 561 581 - -
Trre5g02678 757 MobiDBLite consensus disorder prediction 66 85 - -
Trre5g02678 757 MobiDBLite consensus disorder prediction 154 184 - -
Trre5g02678 757 Gene3D Tetratricopeptide repeat domain 231 450 IPR011990 GO:0005515
Trre5g02678 757 MobiDBLite consensus disorder prediction 1 250 - -
Trre5g02678 757 MobiDBLite consensus disorder prediction 86 126 - -
Trre5g02678 757 ProSiteProfiles TPR repeat profile. 463 496 IPR019734 GO:0005515
Trre5g02678 757 MobiDBLite consensus disorder prediction 12 48 - -
Trre5g02678 757 Gene3D Tetratricopeptide repeat domain 648 735 IPR011990 GO:0005515
Trre5g02678 757 Pfam Tetratricopeptide repeat 632 705 - -
Trre5g02678 757 Pfam Tetratricopeptide repeat 254 325 - -
Trre5g02678 757 Pfam MalT-like TPR region 394 581 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02678 Trre-Chr5 21150252 21153054 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02678 - - gmx:100783201 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02855 15 24714933 24717238 Trre5g02678 5 21150252 21153054 ECH
Trre5g02678 5 21150252 21153054 Trre5g02678 5 21150252 21153054 ECH
Trre15g02855 15 24714933 24717238 Trre5g02678 5 21150252 21153054 PCT