Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02855 ATGCCAGGTATTGCTACAATTGAAAGAAATAAAATGAATGAGCTTGAGAACCCTTCTTCATCTAAGAAAATCTTAAATCAAACCAATTCACCAAGAATACCCTTAAGTCCACAAAGCGTCGAGAGGCGTGACATAAGAAGTTTTCATTCTCGATCACGCTCGAGTCAAAGCTTTGGATCTGATAGTGATTGGTCTATAGCTGATTCAGAATTTAGCTATCTTGGTGAAGGAAAAATGAGGAATGTGGAGTTAGTGAAAGAGGAAATGGAGAAAAAGATGGAGAAGGATTCTAGCAATGAAACATCATCAAAATCAAGAGCTAGGGGAAAAAGTTCTCATACAAAACCTCCTATTGAAAAGAAGAATGACAACAATAATTTGAGAAAACAAAATACAATGGTTACTACTCGTGCGACAAAATCTAAAAGTGGTTCTGTTGGAAGATCAAGGTCACAAAGCCGAGTTGAGAATTCCAAAGAATCGCCAACATTTGATAATCCCGAGCTTGGACCATTTTTACTAAAGCAAGCGAGGGACTTGATTTCGTTAGGAGAGAATCCGCATAAGGCGCTTGAATATTCCCTTCAAGCGATGAACATGTTTGAGAAATCTGCGAATGGGAAACCGGGTTTGGATTTGGTAATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTAGGGGATTACAAGGAGGCAATTCCGATTCTAGTGCGATCGGTAGAGATTCCTATGGTTGAGGAAGGCCAACAACACGCCATTGCTAAATTCGCCAGTCACATGCAGCTTGGAGACACATATGCCATGCTAGGCCAGCTTGAGAACTCAATTATGTGTTACAATAAAGGGTTGGAAGTACAAAGACAAGTTTTGGGAGCAACAGACCCAAGAGTTGGTGAAACTTGTAGGTATGTGGCAGAAGCTAATTTTCAAGCATTGCAATTTGATGAGGCAGAAAGATTGTGCCAAGTGGCTCTTGATATTCACAGAGAAAATGGTTCACCTTCTTCTCTTGAAGAGGCGGCGGATAGAAGGTTAATGGGACTTATATGTGAAACTAATGGAAATCATGAAGCAGCATTAGAGCACCTTGTTTTAGCAAGCATGGCAATGGTATCAAATGGCCAAGAGGTTGAAGTAGCGTCTGTTGATTGCAGCATTGGAGACACATTCCTATCGTTAGCTCGATACGATGAGGCCATCTTGGCATATAAAAAGGCGTTAGCGGTTTTCAAGACTCACAAAGGAGAGAATCATCCTGCGGTTGGATCGGTCTATGTACGCTTGGCCGAGTTGTATACTAGGACATGGAAAATAAAGGAATCAAAATCATATTGCGAAAATGCACTTAAAATATATGAAAATCCCATGTCTGGTGTCCCTTCGGATGAGATTGCTAGTGGTCTTGTGAATGTTGCAGCTATTTATGAGTCAATGAATGAGCTTGAACAAGCACTCAAGTTACTGCATAAGGCATTAAAGATACATAATGATGCTCCTGGTCAGCAGAACACAATAGCAGGAATTGAAGCTCAAATGGGGGTCATATTCTATGTATTGGGAAACCAAACTGAATCTTACAATGCTTTTAAGAATGCCATCTCAAAACTTCGTGCCACGGGAGAGAAAAAATCGGCTTACTTTGGTATTGTACTTAATCAAATGGGTCTTTGTTGTGTGCAGCTCTGCGAATTAACCGAGGCCGCAAAATTATTTGAAGAAGCCAAAATTGTTCTGGAACAAGAGTATGGTCCCTATCACCCTGAAACTATTGGGGTATATAGCAATCTGGCTGGCACATATGATGCACTTGGCAGGGTGGACGATGCAATTGATATAATGGAGTACATTGTTGTTGTGAGGGAGGAAAAGCTTGGAACAGCACACTTTGATGTTGTTGATGAGAAGAGAAGGTTGGATGAGTTGTTGAAGGAAACAGGTAGAGTTCGGAACAGAAAAACAAAGTCACTTGAGATCCTTCTAGATGTCTTTGAAGATTAA 2001 0.4053 MPGIATIERNKMNELENPSSSKKILNQTNSPRIPLSPQSVERRDIRSFHSRSRSSQSFGSDSDWSIADSEFSYLGEGKMRNVELVKEEMEKKMEKDSSNETSSKSRARGKSSHTKPPIEKKNDNNNLRKQNTMVTTRATKSKSGSVGRSRSQSRVENSKESPTFDNPELGPFLLKQARDLISLGENPHKALEYSLQAMNMFEKSANGKPGLDLVMCLHVTAAIYCSLGDYKEAIPILVRSVEIPMVEEGQQHAIAKFASHMQLGDTYAMLGQLENSIMCYNKGLEVQRQVLGATDPRVGETCRYVAEANFQALQFDEAERLCQVALDIHRENGSPSSLEEAADRRLMGLICETNGNHEAALEHLVLASMAMVSNGQEVEVASVDCSIGDTFLSLARYDEAILAYKKALAVFKTHKGENHPAVGSVYVRLAELYTRTWKIKESKSYCENALKIYENPMSGVPSDEIASGLVNVAAIYESMNELEQALKLLHKALKIHNDAPGQQNTIAGIEAQMGVIFYVLGNQTESYNAFKNAISKLRATGEKKSAYFGIVLNQMGLCCVQLCELTEAAKLFEEAKIVLEQEYGPYHPETIGVYSNLAGTYDALGRVDDAIDIMEYIVVVREEKLGTAHFDVVDEKRRLDELLKETGRVRNRKTKSLEILLDVFED 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02855 666 Coils Coil 479 499 - -
Trre15g02855 666 Gene3D Tetratricopeptide repeat domain 172 342 IPR011990 GO:0005515
Trre15g02855 666 SUPERFAMILY TPR-like 217 499 IPR011990 GO:0005515
Trre15g02855 666 SUPERFAMILY TPR-like 387 628 IPR011990 GO:0005515
Trre15g02855 666 SMART tpr_5 507 540 IPR019734 GO:0005515
Trre15g02855 666 SMART tpr_5 549 582 IPR019734 GO:0005515
Trre15g02855 666 SMART tpr_5 466 499 IPR019734 GO:0005515
Trre15g02855 666 SMART tpr_5 257 290 IPR019734 GO:0005515
Trre15g02855 666 SMART tpr_5 423 456 IPR019734 GO:0005515
Trre15g02855 666 SMART tpr_5 341 374 IPR019734 GO:0005515
Trre15g02855 666 SMART tpr_5 591 624 IPR019734 GO:0005515
Trre15g02855 666 SMART tpr_5 381 414 IPR019734 GO:0005515
Trre15g02855 666 SMART tpr_5 299 332 IPR019734 GO:0005515
Trre15g02855 666 MobiDBLite consensus disorder prediction 1 64 - -
Trre15g02855 666 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 52 662 - -
Trre15g02855 666 Gene3D Tetratricopeptide repeat domain 548 646 IPR011990 GO:0005515
Trre15g02855 666 MobiDBLite consensus disorder prediction 127 164 - -
Trre15g02855 666 Pfam Tetratricopeptide repeat 380 455 - -
Trre15g02855 666 Pfam Tetratricopeptide repeat 550 614 - -
Trre15g02855 666 Coils Coil 79 99 - -
Trre15g02855 666 MobiDBLite consensus disorder prediction 89 126 - -
Trre15g02855 666 Gene3D Tetratricopeptide repeat domain 364 547 IPR011990 GO:0005515
Trre15g02855 666 ProSiteProfiles TPR repeat profile. 466 499 IPR019734 GO:0005515
Trre15g02855 666 MobiDBLite consensus disorder prediction 12 36 - -
Trre15g02855 666 Pfam Tetratricopeptide repeat 259 288 IPR019734 GO:0005515
Trre15g02855 666 ProSiteProfiles TPR repeat profile. 381 414 IPR019734 GO:0005515
Trre15g02855 666 MobiDBLite consensus disorder prediction 89 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02855 Trre-Chr15 24714933 24717238 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02855 - - psat:127073916 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02855 15 24714933 24717238 Trre5g02678 5 21150252 21153054 ECH
Trre15g02855 15 24714933 24717238 Trre15g02855 15 24714933 24717238 ECH
Trre15g02855 15 24714933 24717238 Trre5g02678 5 21150252 21153054 PCT