Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02675 ATGGCAACTCACCCAGCCATGAAGAAATCATGGTCGAGAGGCTCCGATTCCACTCAGTTCGAATCACCTGCACGTTTCTGCTCTCCTTTACGATGGGACACAACAGACTCACCGGAGTATCGTTCACCGGAAAACTCGCCGGGAAAGCTGGTGGACAATTCAATGGCCGTAGTCGCCGTCGACAAGAAGCTGAGGAAATTCTCTCATGAGAAACTCCCACAACAACAAAAGCCACCGGAGAATGCTGTCATGGTGGTCAATCGACCAGAGAGAGATCAGGAGTCTCAACGGCAGACGACGAAAGTGGCGACCACAGATGTTGAAGCTGAACGGAGACCGAGGTCGGCTTCTTCTGTTGGTAGGACGGCAGAGGAGGTTACGAGAAAGGCGGCGTTAGGGTTCCGGCTATGCGAGGTGGTTGTTTGTTTGATTTCGTTTTCAGTTATGGCTGCTAATAAGACGCAAGGTTGGAGTGGTGACTCTTATGATCGTTATAAAGAATACAGGTATTGTTTATCTGTGAATGTTATTGGATTTTCATACTCAGCATTACAAGCATTTGATCTGGCCTATCAACTAGTAACAGAGAAACACATCATCAGTCACCACCTTCGCTATCACTTTCAGTTCATCATGGATCAGGTTGTGGCATATCTTCTGATATCAGCATCATCCTCTGCAGCTACACGGGTGGACGATTGGCAATCGAATTGGGGGAAAGACGAGTTCACAGAGATGGCTACGGTTTCGATTGGAATGTCCTTCCTAGCTTTTTCTGCCTTTGCTATGAGCTCACTCATATCTGGTTACATCCTTTGTACCCGCCGCAACTCTGTGTGA 840 0.4786 MATHPAMKKSWSRGSDSTQFESPARFCSPLRWDTTDSPEYRSPENSPGKLVDNSMAVVAVDKKLRKFSHEKLPQQQKPPENAVMVVNRPERDQESQRQTTKVATTDVEAERRPRSASSVGRTAEEVTRKAALGFRLCEVVVCLISFSVMAANKTQGWSGDSYDRYKEYRYCLSVNVIGFSYSALQAFDLAYQLVTEKHIISHHLRYHFQFIMDQVVAYLLISASSSAATRVDDWQSNWGKDEFTEMATVSIGMSFLAFSAFAMSSLISGYILCTRRNSV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02675 279 Pfam Casparian strip membrane protein domain 127 259 IPR006702 -
Trre5g02675 279 MobiDBLite consensus disorder prediction 89 121 - -
Trre5g02675 279 MobiDBLite consensus disorder prediction 10 24 - -
Trre5g02675 279 PANTHER CASP-LIKE PROTEIN 4A4 103 273 - -
Trre5g02675 279 MobiDBLite consensus disorder prediction 1 52 - -
Trre5g02675 279 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02675 Trre-Chr5 21070841 21072670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02675 - - gmx:100789870 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02851 15 24663497 24665215 Trre5g02675 5 21070841 21072670 ECH
Trre5g02675 5 21070841 21072670 Trre5g02675 5 21070841 21072670 ECH
Trre15g02851 15 24663497 24665215 Trre5g02675 5 21070841 21072670 PCT