Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02672 ATGAAAATTCATTTCATCTTCTTGTTCTTGTCACTCTCTTTTTTCCATGTTTTTGTAGCAACCATTGGTGAAAGTGAAACACAAGAATATTCTCCTAAACAAAAGACAAACCCTTTCAGTCCCAAAGCCTCACTCATTCGTTACTGGAACACTAAAATCTCTAACCAACTTCAAATCCCTAATTTTTTTCTCTCTAAAGCTTCTCCTCTCACAACATACCAATACGCAAATCTCATAAATCTCCTCAAACAAAAACCTTCCTCTTCAAATCTCCACCGTTCGCTCTGCTCCACACCATACTTATTCTGCTCCTTCGACCACCCAAACACACTCCACCAATCCACAAAAACCACTAAAAACGACTCCAACTTCGCCATCTACTCAAACAAACGATTCGCAAACTACGGCTCAGCTCGACTCGGTGGAGTTGACTCGTTCAAAAACTACTCAAACGGGTTAAACACAAACAACGACTCATTCAAGAAATACAGCACAACCGCAACTCGTCACGGTGGAGAATTCAACAACTACGCAGAAAACGGCAATGTAGCTAACACGAATTTCACCAGCTACGGTTCCGGTTCAACTTCCGGTACCGGAGATTTCAAAAGCTACGATAAACTCGTAAATGTTCCGAATCTAGGTTTCACTACCTACGACTCCGCCGCTAACAACCACAAACTCTCGTTCTCAAGCTACGGTAATGAAACAAATTCTGGATCGCAATTGTTCAACAGTTACGGAAAACGCGTTCGTAGCGGTAACAGCGATTTCATCAATTACGCTGCGGATTCCAACATTCTTCAATCAACGTTCACCGGTTACGGTGAATTAGGAACCGGAGCCGCCAACGATTCTTTCAGATCGTACAGTTTCAACGGTAATAATCCTCGGAGTAGCTTCAAAACTTACGGTGCCGCATCTGTTTCCGGTTCCGATACTTTTGTTAGTTATCGGAATCGCGCTAACGTCGGCGATGATTCGTTTCAAAGCTACGGTTCAAAATCAAAATCTGGTACTGCGTCGTTTACGAACTATGGACAATCGTTTAACGAAGGAAACGATACTTTCACTGAATATGGAAAAGGAGCTTCAGGTAAAACCGCGTTTGGATTCAAAACTTATGGATTAGGACGCGCGTTCAAAGGCTACAACAAAAACGGCGTGTCGTTTTCAGCGTATAACAATTTCAGCACATTAAGTGGCAAAATGGTAAATAAATTTATCGAACCGGGTAAGTTTTTCAGAGAATCGATTTTAAAGGAAGGAAATGTAATGGTGATGCCAGACATTAGAGACAAAATGCCTGCAAGGACGTTTTTGCCCCTATCAATTTCATCGAAATTACCCTTCTCGTCCTCAAGTTTGGACGATATAAAAGAAATGTTTCACGCGCGGGAAGGTTCAGCAACAGAGCGCGTGATAATTAACACGCTTGGAGAATGCGAGAGAGAACCGAGTGTAGGAGAAACAAAACGGTGCGTTGGATCAGCTGAAGGGATGATTGAGTTTGCAGTTTCTGTATTAGGCTCCAATGTGGTTGTGAAAACAACTGAAAATGTGAATGGGTCAAAAGGAACGGTGATGATTGGAAAAGTGTATGGAATCGACGGTGGAAAAGTGACTAAATCGGTTTCGTGTCATCAGAGTTTGTACCCTTACTTACTGTATTATTGTCACTCTGTCCCTAAAGTGAGAGTTTATGAAGCTGAAATTCTTGACGTGGATACTAAGTCAAAGATTAATTATGGAGTTGCCATCTGTCATCTTGACACGTCATCGTGGGGCCCAAAACATGGTGCTTTCTTAGCTTTGGGGTCGGGTCCTGGAAAAATTGAGGTTTGTCATTGGATTTTTGAGAATGACATGACGTGGACCATTGCTACTTGA 1890 0.4217 MKIHFIFLFLSLSFFHVFVATIGESETQEYSPKQKTNPFSPKASLIRYWNTKISNQLQIPNFFLSKASPLTTYQYANLINLLKQKPSSSNLHRSLCSTPYLFCSFDHPNTLHQSTKTTKNDSNFAIYSNKRFANYGSARLGGVDSFKNYSNGLNTNNDSFKKYSTTATRHGGEFNNYAENGNVANTNFTSYGSGSTSGTGDFKSYDKLVNVPNLGFTTYDSAANNHKLSFSSYGNETNSGSQLFNSYGKRVRSGNSDFINYAADSNILQSTFTGYGELGTGAANDSFRSYSFNGNNPRSSFKTYGAASVSGSDTFVSYRNRANVGDDSFQSYGSKSKSGTASFTNYGQSFNEGNDTFTEYGKGASGKTAFGFKTYGLGRAFKGYNKNGVSFSAYNNFSTLSGKMVNKFIEPGKFFRESILKEGNVMVMPDIRDKMPARTFLPLSISSKLPFSSSSLDDIKEMFHAREGSATERVIINTLGECEREPSVGETKRCVGSAEGMIEFAVSVLGSNVVVKTTENVNGSKGTVMIGKVYGIDGGKVTKSVSCHQSLYPYLLYYCHSVPKVRVYEAEILDVDTKSKINYGVAICHLDTSSWGPKHGAFLALGSGPGKIEVCHWIFENDMTWTIAT 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02672 629 Pfam BURP domain 414 626 IPR004873 -
Trre5g02672 629 ProSiteProfiles BURP domain profile. 414 628 IPR004873 -
Trre5g02672 629 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 16 628 - -
Trre5g02672 629 SMART BURP_2 412 628 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02672 Trre-Chr5 21033339 21035387 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02672 - - lja:Lj1g3v0411530.1 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02057 15 16689356 16690441 Trre5g02672 5 21033339 21035387 ECH
Trre5g02672 5 21033339 21035387 Trre5g02672 5 21033339 21035387 ECH