Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02641 ATGGAATATCACTATGACAGTGGCTCTTCCTCATCTCACTCCAACCACTACCTTCAACAACAAACTGGGTCAACTTCCCTCACTTCACAACGCAGTCTCCTCTCAGTTCCTTCCCTCAACAACACTCGCCACCACCACCACAATTACCACCTCATCACAACCCTCAAAAACCACCATAACACATCTTACACATCCTCTCTTACCCTCTTTGGTAAATTCCTCCTCACTGGTTCATCCGACAGAGAAATCACAACCTGGAACAGAACAACCTCCGAAGAACAACAACAAAACAACGTAGTAATTGCAGGAAAAGGTGCTATTAAATCTTTAGTAATTCAATCAAACACAAACACCCTTTTCAGTGCTCATCAAGATCACAAAATCCGCGTTTGGAAATTAACAAATGATCAAAAGAAATACACCCATTTAGCAACACTTCCTACACTTGGTGACCGTGCTTCCAAAATCTTAATCCCAAAAAACCATGTTCAAATTCGTAGACACAAAAAATGCACGTGGGTTCATCATGTAGACACTGTTTCTTCACTTGCTCTCTCTAAAGATGGAAACTTTTTATACTCTGTTTCATGGGACAGAACAATCAAAATCTGGAGAACTAAAGATTTCACTTGTTTGGAATCCATAACAAACGCACACGATGATGCCATTAACGCAGTTGTAGTTTCTTATGATGGTGTTGTTTATAGTGGATCAGCTGATAAAAGAATCAAAGTTTGGAAGAATCTTCAAGGAGATGATGATAAGAAACAAAAACAAAAACACTCTCTTGTTGATACTTTAGAAAAACATAACTCTGGAATCAATGCTTTGGTTTTAAGCAGTGATGAATCTATTTTATATTCTGGTGCTTGTGATAGATCAATATTGGTTTGGGAGAAAGAAGTTAACAATGATGAAGATGAAGAAGATGGTGATGGTGATGGAAGAATGGTTCTAATGGGTGCTTTAAGAGGACATAAAAGTTCAATATTGTGTTTAGCTGTTGTGTGGGATTTGGTGTGTAGTGGTTCAGCTGATAAAACTATAAGAATTTGGAGAGGTGTTGGAAGAGAGTATTGTTGTTTGTCTGTTTTAGAAGGACATCAAGGTTCAATTAAGTGCTTAACTGCAGTGGTTGAAAATTGTGATACCTCTGAATCAGAAGAAGCATCTTTTTTAGTCTATAGTGGTAGTTTGGACTGTGACATTAAGGTTTGGCAGATTTTTGTTCCTGCTGAGTGA 1242 0.38 MEYHYDSGSSSSHSNHYLQQQTGSTSLTSQRSLLSVPSLNNTRHHHHNYHLITTLKNHHNTSYTSSLTLFGKFLLTGSSDREITTWNRTTSEEQQQNNVVIAGKGAIKSLVIQSNTNTLFSAHQDHKIRVWKLTNDQKKYTHLATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSKDGNFLYSVSWDRTIKIWRTKDFTCLESITNAHDDAINAVVVSYDGVVYSGSADKRIKVWKNLQGDDDKKQKQKHSLVDTLEKHNSGINALVLSSDESILYSGACDRSILVWEKEVNNDEDEEDGDGDGRMVLMGALRGHKSSILCLAVVWDLVCSGSADKTIRIWRGVGREYCCLSVLEGHQGSIKCLTAVVENCDTSESEEASFLVYSGSLDCDIKVWQIFVPAE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02641 413 CDD WD40 51 407 - -
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 247 IPR001680 GO:0005515
Trre5g02641 413 Gene3D - 159 410 IPR015943 GO:0005515
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 141 IPR001680 GO:0005515
Trre5g02641 413 SUPERFAMILY WD40 repeat-like 46 408 IPR036322 GO:0005515
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 204 - -
Trre5g02641 413 Gene3D - 22 149 IPR015943 GO:0005515
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 214 IPR001680 GO:0005515
Trre5g02641 413 SMART WD40_4 260 299 IPR001680 GO:0005515
Trre5g02641 413 SMART WD40_4 93 132 IPR001680 GO:0005515
Trre5g02641 413 SMART WD40_4 208 247 IPR001680 GO:0005515
Trre5g02641 413 SMART WD40_4 166 205 IPR001680 GO:0005515
Trre5g02641 413 SMART WD40_4 316 353 IPR001680 GO:0005515
Trre5g02641 413 SMART WD40_4 358 407 IPR001680 GO:0005515
Trre5g02641 413 SMART WD40_4 48 87 IPR001680 GO:0005515
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 352 - -
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 352 IPR001680 GO:0005515
Trre5g02641 413 PRINTS G protein beta WD-40 repeat signature 394 408 IPR020472 -
Trre5g02641 413 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Trre5g02641 413 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Trre5g02641 413 Pfam WD domain, G-beta repeat 174 204 IPR001680 GO:0005515
Trre5g02641 413 Pfam WD domain, G-beta repeat 360 406 IPR001680 GO:0005515
Trre5g02641 413 Pfam WD domain, G-beta repeat 211 247 IPR001680 GO:0005515
Trre5g02641 413 Pfam WD domain, G-beta repeat 107 132 IPR001680 GO:0005515
Trre5g02641 413 Pfam WD domain, G-beta repeat 320 352 IPR001680 GO:0005515
Trre5g02641 413 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 299 IPR001680 GO:0005515
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 96 IPR001680 GO:0005515
Trre5g02641 413 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 409 IPR045182 -
Trre5g02641 413 FunFam BnaA09g28200D protein 163 251 - -
Trre5g02641 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Trre5g02641 413 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02641 Trre-Chr5 20740974 20742215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02641 115 407 Acyl Lipid Metabolism Gene Families AT3G18860 25.338 1.32e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02641 - - gmx:100777242 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02799 15 23975190 23976533 Trre5g02641 5 20740974 20742215 ECH
Trre5g02641 5 20740974 20742215 Trre5g02641 5 20740974 20742215 ECH
Trre15g02799 15 23975190 23976533 Trre5g02641 5 20740974 20742215 PCT