Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02799 ATGGAATATCAAAGATCCTTCAGCAATGACTCTAATAACCTCCAAAATGAGTTAACTACTAGACGTACGCTTTCTTCGCAACACAGCCTCGCATCAGTTCCTTCTCTCAACTCATCAAACTCGCAACAATTTCATAATTCTTCCTTCACATGTCTCACAACTCTCAAACTTCAAACATACATATCCTCTTTAACCCTTGCAGGAAAATTCCTCTACACTGGTTCATCCAACAAAGAAATCACATCATGGAACCTTTCCAATTTTCATTCACACCCTCAAGAATCAATAACTAACACATTAGAATCTGGAAACGGTGCTGTGAAATCCATACTAGTTCATTCCGACAAGCTTTTCACAGCTCACCAAGACAACAGAATCCGCGTTTGGAAAATCGCCATTAACAATAACAATGAATATCAACAACAAAAGTTCACCCATTTAGCCACACTTCCAACATTCATCGACCGTTTCTCGAAAATCTTGATCCCAAAAAACCATGTTAAGATTCGAAGACACAAAAAATGCACATGGGTTCACCATGTTGATACAGTCTCTTCCCTTGCCTTATCCAAAGACGGAACCTTGTTGTATTCTGTTTCGTGGGACAGAACAATCAAGGTCTGGAAAACCAATGACTTCACATGTTTAGAATCAGTTCACAATGCGCACGACGATGCAATAAACGCAATTGCAGTTTCTAATGATGGATATGTTTACACTGGATCAGCAGATAAAAAAATTAAGGTTTGGAAGAAAGAAAACGGTGAGAAGAAACATTCATTGGTTGATACCTTGGAGAAACATAAATCTGGTATTAATGCATTGGCTCTTAACAATGATGGTTCTGTTTTATATTCTGGTGCATGTGATAGATCAATATTGGTATCTGAGAAAGGTGAAAATGGTAACTTGGTTGTGATGGGTGCTCTTCGCGGTCACACAAAGTCTATATTGTGTTTGGCTGTGGTTTCTGATTTAGTTTGCAGTGGTTCTGAGGATAAGACAATTCGAATTTGGAGAGGGAACCGACGGTTATGA 1038 0.3873 MEYQRSFSNDSNNLQNELTTRRTLSSQHSLASVPSLNSSNSQQFHNSSFTCLTTLKLQTYISSLTLAGKFLYTGSSNKEITSWNLSNFHSHPQESITNTLESGNGAVKSILVHSDKLFTAHQDNRIRVWKIAINNNNEYQQQKFTHLATLPTFIDRFSKILIPKNHVKIRRHKKCTWVHHVDTVSSLALSKDGTLLYSVSWDRTIKVWKTNDFTCLESVHNAHDDAINAIAVSNDGYVYTGSADKKIKVWKKENGEKKHSLVDTLEKHKSGINALALNNDGSVLYSGACDRSILVSEKGENGNLVVMGALRGHTKSILCLAVVSDLVCSGSEDKTIRIWRGNRRL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02799 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 345 - -
Trre15g02799 345 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 341 IPR045182 -
Trre15g02799 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 256 - -
Trre15g02799 345 Gene3D - 30 152 IPR015943 GO:0005515
Trre15g02799 345 FunFam BnaA09g28200D protein 167 255 - -
Trre15g02799 345 Pfam WD domain, G-beta repeat 221 251 IPR001680 GO:0005515
Trre15g02799 345 Pfam WD domain, G-beta repeat 308 339 IPR001680 GO:0005515
Trre15g02799 345 Pfam WD domain, G-beta repeat 178 209 IPR001680 GO:0005515
Trre15g02799 345 Pfam WD domain, G-beta repeat 262 294 IPR001680 GO:0005515
Trre15g02799 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
Trre15g02799 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 339 IPR001680 GO:0005515
Trre15g02799 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 209 - -
Trre15g02799 345 SMART WD40_4 303 340 IPR001680 GO:0005515
Trre15g02799 345 SMART WD40_4 48 84 IPR001680 GO:0005515
Trre15g02799 345 SMART WD40_4 93 130 IPR001680 GO:0005515
Trre15g02799 345 SMART WD40_4 170 209 IPR001680 GO:0005515
Trre15g02799 345 SMART WD40_4 258 297 IPR001680 GO:0005515
Trre15g02799 345 SMART WD40_4 212 251 IPR001680 GO:0005515
Trre15g02799 345 SUPERFAMILY WD40 repeat-like 68 340 IPR036322 GO:0005515
Trre15g02799 345 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Trre15g02799 345 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Trre15g02799 345 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Trre15g02799 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Trre15g02799 345 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g02799 345 Gene3D - 166 344 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02799 Trre-Chr15 23975190 23976533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02799 174 345 Acyl Lipid Metabolism Gene Families AT3G18860 26.087 3.13e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02799 - - gmx:100801906 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02799 15 23975190 23976533 Trre5g02641 5 20740974 20742215 ECH
Trre15g02799 15 23975190 23976533 Trre15g02799 15 23975190 23976533 ECH
Trre15g02799 15 23975190 23976533 Trre5g02641 5 20740974 20742215 PCT