Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02517 ATGATCAAACAGATACTTGGTAAAATACCGCGGAAGCCTTCGAAATCATTGCATAGTGATTCTAACGGTGATGGAGGGTTGGTCAATGGTGGTTCTGATTCATCATTGAATTCATCTTATGGTAGTTCCAATGGTACTTTGAAATCTAATTCAGCTTCTTCAAATTCTTCAAATTCTGGTTTGGGTGGGTTGTATTCTGGGAATGGGAGTTCTGCCCCGCCGTCAACAAATTCGAGTAAAACAAATCAAGTTAGGAAATCAGCTGCTGTGATTGGATCCCAAGTTGGTATTATAATGGCTCATGGTAATGGTGTTTACGAGGCTTTGCCGGGTTTTCGAGATGTTTCTAGCTCAGAAAAGCCTAATCTTTTTATAAGGAAGTTAAATATGTGTTGTGTTGTATTTGATTTTAATGATCCTACCAAGCATCTTAAAGAGAAGGATATCAAGAGGCAAACATTGCTTGAGATTGTTGATTATATTTCATCTGTGAATTCAAAGTTCAATGAAGCGACGATGCAGGAGATCACCAAGATGGTGGCAGCAAATTTATTTCGAACTCTATCGTGTTCGAATCATGATGGTAAGGTTGCAGAAGCATATGATCCTGAGGAAGACGAGCCTGCATTGGAACCGGCGTGGAGTCATCTGCAGATTGTGTATGAAGTTCTGTATAGGTTTGTGGCTTCATCAGAGACAGATGCAAAGCTTGCTAAACGATACATTGATCATTCATTTGTATTGAGACTTCTTGACCTCTTTGACTCTGAGGATCAACGAGAGAGGGAATATTTGAAGACTATTCTCCACCGTATTTATGGGAAGTTCATGGTACATCGGCCGTACATTAGAAAAGCTATCAATAACATCTTTTATCAGTTCATATTTGAGACAGAAAAACACAATGGAATTGCAGAAATGCTGGAGATTTTGGGCAGTATAATTAATGGATTTGCTTTGCCTTTAAAGGAAGAGCATAAACTGTTCCTTACCCGTGCATTGATCCCACTTCACAAGCCAAAGTGTGTCTCAATGTATCATCAACAACTTTCATACTGCATTATACAGTTTGTTGAGAAAGATGTCAGATTAGCTGATACTGTGATTAGAGGCCTATTGAAATATTGGCCTGTAACTAATAGTGGAAAGGAGGTAATGTTCCTTAGTGAACTGGAGGAAGTTTTAGAGGCCACTCAAGCAGTTGAATTTCAGAAATGTGCGGTGGGCTTGTTTCGTCAAATTGCTAGATGCCTCACCAGCCTACACTTTCAGGTAGCTGAACGGGCACTGTTTCTTTGGAACAACGATCATATTAGAAATTTGATAATTCAAAATAGCAAAGTAATACTACCTGTAATCTTCCCTGCATTGGAGAAAAACGCACGGGGCCACTGGAACCAAGCTGTTCAGAGTTTGACTCTGAATGTGAGGAAAATATTCTCGGAGGCTGATCAGACACTTTTTGATGAATGCATGATCAAATTCCAAGAAGATGAAAGCAAGGAACGAGAGAAGCAAGAGAAGCGGGAATCCTCATGGAAGAAATTGGAAGATGTGGCTGTTACATCCACATCTATAAGCAATGAAGCAGTTCTTGCCTCAAGGTTCGCTTCCTCTCTCGCTGTTGCTACGGTACAAAGCAACTATTAA 1650 0.4 MIKQILGKIPRKPSKSLHSDSNGDGGLVNGGSDSSLNSSYGSSNGTLKSNSASSNSSNSGLGGLYSGNGSSAPPSTNSSKTNQVRKSAAVIGSQVGIIMAHGNGVYEALPGFRDVSSSEKPNLFIRKLNMCCVVFDFNDPTKHLKEKDIKRQTLLEIVDYISSVNSKFNEATMQEITKMVAANLFRTLSCSNHDGKVAEAYDPEEDEPALEPAWSHLQIVYEVLYRFVASSETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPYIRKAINNIFYQFIFETEKHNGIAEMLEILGSIINGFALPLKEEHKLFLTRALIPLHKPKCVSMYHQQLSYCIIQFVEKDVRLADTVIRGLLKYWPVTNSGKEVMFLSELEEVLEATQAVEFQKCAVGLFRQIARCLTSLHFQVAERALFLWNNDHIRNLIIQNSKVILPVIFPALEKNARGHWNQAVQSLTLNVRKIFSEADQTLFDECMIKFQEDESKEREKQEKRESSWKKLEDVAVTSTSISNEAVLASRFASSLAVATVQSNY 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02517 549 MobiDBLite consensus disorder prediction 1 85 - -
Trre5g02517 549 Gene3D - 117 519 IPR011989 -
Trre5g02517 549 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 116 519 - -
Trre5g02517 549 PIRSF PP2A_B56 12 548 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre5g02517 549 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 109 520 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre5g02517 549 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 524 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre5g02517 549 MobiDBLite consensus disorder prediction 19 85 - -
Trre5g02517 549 SUPERFAMILY ARM repeat 121 505 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02517 Trre-Chr5 19591353 19596420 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02517 K11584 - mof:131148905 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02517 5 19591353 19596420 Trre5g02517 5 19591353 19596420 ECH
Trre1g00744 1 5626587 5628343 Trre5g02517 5 19591353 19596420 PCT