Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02315 ATGGAAGGAAAAACCAATAAGAACAAGATGGAAAAAGTTGAATTAGGCTTCAATTTCATGGGAAAACTCTTCAAACTCAAAACCAAGAAGCTCAGAAATTCATCATCTGTTCATTCACTACCCATCAAGACAATTAACAATCCACAACAAAAAGAATCAAAAGGGTCACCAAATCACGACTCGAAAATTCCAACAGAGCCTCAACCACAAAAAAGCATCACTTTTTCTCACACAACTACAGATTCTGCAAGAAGCTCAATTCAACAGAAAGAGCCTAATAGTAATTCTTTAGCACTTGCAAGAATAAGCACTTCTAGTCGCCCGCACGACAACGAAAACAAATCTCCAAGCAAAGATTTGAGCACTATAAAACTAACTGGAAATTTGCTTACAAATAGTAGCTATAATAGTCCAAGAACAAGTGATACAAAGAATAATAAAGAGTTAAATTCTGTGTCATGTTCTTTGAACAATAGTGTAATGGGGAATATAATGAGGAAAAGTGGTGACGGGGTGTCGCAATTTCGAAGTCCTAGAAGCAACAAAGTACTAGACCCTGAGGGGTTAAAATCAATGGGAAATGAAGCATACAAACAAGGAAGATTTTCTGAGGCTTTAGCTTTGTATGAACGAGCTATTGCTATTGATTCCAATAAGGCAACTTATCATTGCAATAAAAGTGCTGCTTTAATTGGGTTGGGAAGGTTTAAGGATGCAATTGTTGAGTGTGAAGAAGCTATTAGGATTGAACCTTGCTATGCTAGAGCTCATAGCCGTTTGGCTACGATATATTTCAGGTTGGGAGAAGCTGAAAAGGCATTGAATTGCAATAAAGAAACACCATATTTTGATTCAGAATTTGCTCACCAAGTTCAGGCTCTTCAAACTCATCTTGACAAATGCAGTGAAGCTAGGAAAATCAATGATTGGAAAGTGATATTGAAAGAAACAAAGTCTGCAATATCCTTAGGTGCTGATTCAGCTCCAAAGGTCTATGCTTTACAAACTGAAGCTTTGCTGAAGCTCTTAAGGCATCAAGAAGCTTATGCCACATACGAGAAAATTCCAAAATTTGAGCTTGATTGGTGTAACAAATTATTTGGACCTGTTTCTAGTGCTTACTTTCTGATGATAGGAGCACAAGTTTACTTGGCAACCGGCAGATTTGAGGATGCTGTGAAAGCATCACAACAAGCAGCTAAACTTGATCCAAGGAACAGTGATGTGAATACAGTGGTACGAAGGGCAAGAGCCGCGACATCTGCAAGATTGAGTGGTAACTTGCTCTTCAAGGCATCAAAGTTCACAGAAGCATACGCAGTATACAATGAAGGACTAGAGCACGATCCTTTCAACTCGGTTCTTCTATGTAACAGGGCGGCATGCCGTTCTAAGCTAGGTCAATTTGAGAAGGCAATTGAAGATTGCAATTTAGCTCTTAGAGTTCAACCTAGTTATAGCAAGGCAGTGTTGCGCCGGGCAGATTGCAATGCCAAGTTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAATGTTGATAAGAGAAAAGCCGGGGGATGAGGAGGTTGCTAGGGCATTGTTTGAGATCCAGCTAAAACTCAAGATTATGCGCGGCGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGTTTTGCATATCAACCAATGATAGGTTTAGACATTATGTAACCTCACCTGGTATGTCTGTGGTGCTCTTTTGCAACAAAGTTACTCATAAGCAAATTTTGTTGGTGTTGGAGCAAACCTGCAAGAGATTCCCTTCAGTTAATTTCCTTAAGGTGGAAATTGAGGACCATCCTTACTTAACAAAATCAGAAGGAGTGAACTCTGTGCCAGCATTCAAAATATATAAGAATGGATCAAGGGTAAAAGAAATCTCTGGCAACAACCATGAGATGCTAGAAAGATCAATTAAATTATATAGCAGCTGA 1956 0.3885 MEGKTNKNKMEKVELGFNFMGKLFKLKTKKLRNSSSVHSLPIKTINNPQQKESKGSPNHDSKIPTEPQPQKSITFSHTTTDSARSSIQQKEPNSNSLALARISTSSRPHDNENKSPSKDLSTIKLTGNLLTNSSYNSPRTSDTKNNKELNSVSCSLNNSVMGNIMRKSGDGVSQFRSPRSNKVLDPEGLKSMGNEAYKQGRFSEALALYERAIAIDSNKATYHCNKSAALIGLGRFKDAIVECEEAIRIEPCYARAHSRLATIYFRLGEAEKALNCNKETPYFDSEFAHQVQALQTHLDKCSEARKINDWKVILKETKSAISLGADSAPKVYALQTEALLKLLRHQEAYATYEKIPKFELDWCNKLFGPVSSAYFLMIGAQVYLATGRFEDAVKASQQAAKLDPRNSDVNTVVRRARAATSARLSGNLLFKASKFTEAYAVYNEGLEHDPFNSVLLCNRAACRSKLGQFEKAIEDCNLALRVQPSYSKAVLRRADCNAKLERWEAAIQDYEMLIREKPGDEEVARALFEIQLKLKIMRGEDIKDLKFGSNLFCISTNDRFRHYVTSPGMSVVLFCNKVTHKQILLVLEQTCKRFPSVNFLKVEIEDHPYLTKSEGVNSVPAFKIYKNGSRVKEISGNNHEMLERSIKLYSS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02315 651 SMART tpr_5 373 406 IPR019734 GO:0005515
Trre5g02315 651 SMART tpr_5 220 253 IPR019734 GO:0005515
Trre5g02315 651 SMART tpr_5 487 520 IPR019734 GO:0005515
Trre5g02315 651 SMART tpr_5 186 219 IPR019734 GO:0005515
Trre5g02315 651 SMART tpr_5 254 287 IPR019734 GO:0005515
Trre5g02315 651 SMART tpr_5 419 452 IPR019734 GO:0005515
Trre5g02315 651 SMART tpr_5 453 486 IPR019734 GO:0005515
Trre5g02315 651 Pfam Thioredoxin 581 646 IPR013766 -
Trre5g02315 651 Gene3D Tetratricopeptide repeat domain 185 538 IPR011990 GO:0005515
Trre5g02315 651 MobiDBLite consensus disorder prediction 33 106 - -
Trre5g02315 651 MobiDBLite consensus disorder prediction 169 188 - -
Trre5g02315 651 ProSiteProfiles TPR repeat profile. 373 406 IPR019734 GO:0005515
Trre5g02315 651 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 18 647 IPR044534 -
Trre5g02315 651 Coils Coil 493 513 - -
Trre5g02315 651 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Trre5g02315 651 Pfam Tetratricopeptide repeat 455 486 IPR001440 GO:0005515
Trre5g02315 651 Pfam Tetratricopeptide repeat 380 452 - -
Trre5g02315 651 MobiDBLite consensus disorder prediction 118 150 - -
Trre5g02315 651 MobiDBLite consensus disorder prediction 31 150 - -
Trre5g02315 651 CDD TRX_family 560 647 - -
Trre5g02315 651 Pfam TPR repeat 193 228 - -
Trre5g02315 651 Gene3D Glutaredoxin 547 650 - -
Trre5g02315 651 SUPERFAMILY Thioredoxin-like 549 647 IPR036249 -
Trre5g02315 651 SUPERFAMILY TPR-like 184 524 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02315 Trre-Chr5 17699279 17702297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02315 200 517 Glycosyltransferase AT3G04240 21.321 6.69e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02315 K09527 - gmx:100787041 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02315 5 17699279 17702297 Trre5g02315 5 17699279 17702297 ECH
Trre9g03074 9 39103899 39107199 Trre5g02315 5 17699279 17702297 PCT