Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02156 ATGAATCAAGTTGATAATGGTAATAAAAATCCCAAAGATGAAATTGATGAATCTAATGGGAGTCAAGTGAAGGAGTTTGCTTCTATAGATATTCTACATACTAAAAAAACAATTCCAACCGATGAAAATCTTCATAGAAATTTCCTCAAATTTGGTTCTGCATCTGCCAAATTCAAGCAGTCTGTGCCTTCTCCGCATTCCGGTAGCATAAAATCACGTTTTGGTACGATGTTCGGTCAGAAACTTGAATGGAATTCAGTCAAGAAAATGTGCATGGAATGGATAAAAAACCCAATGAACATGGCCCTTTTTGTGTGGATAATCTGTGTTGCTGTTTCAGGTGCAATTCTGTTCTTTGTCATGACAGGGATGTTGAATAATGTACTAAAAACTAAGTCTGAGAGGAACACATGGTTTGAAGTGAATAACCAAATACTAAATGCACTCTTTACACTTGTGTGTTTGTATCATCATCCAAAGAGGTTCCACTATCTTGTTCTTCTGTGTAGATGGAAACCAAATGACATTTCAACACTTAGAATGATTTACTGCAAAAATGGAACTTATAAACCTCATGAATGGACACATATGATGGTAGTGATTATTCTTCTTCATGTTAATTGTTTTGCTCAATATGCACTTTGTAGTCTAAACTTAGGATATAAAAGGTCCGAGAGACCTGCTATTGGAGTTGGAATTACTATATCCGTTGCAATCGCGGCGCCGGCAGTAGCTGGTTTGTACACTATTCTTAGTCCACTTGGGAAAGACTATAATGATTGTGTAATGGATGAGGAATCACAGGTTCAATTTGAGAAAAAATATGCATTTGCATCTAAAGATCAACAAGGAGTTATAGAAAATAGACCAAGTTGGAATGGAAGAATACTTGACATTTGGAATGATTTATCTTTATCACATCTCTCACTTTTCTGCACCTTTTGTGTATTTGGATGGAACATGGAAAGACTTGGATTTGGAAACATGTATGTTCATATAGCTACTTTCATGCTGTTTTGTATGGCTCCTTTTTGGATATTTGTATTGGCTTCTGTCAACATTGATGATGACAATGTTAGACAAGCTTTAGTAGCTATTGGAATCATTCTTTGTTTTTGTGGTTTACTTTATGGTGGATTTTGGAGGATTCAAATGAGAAAGAGGTTTAATTTACCTGCTTATGATTTCTGTTTTGGAAAACCTTCAGTTTCTGATTGTGCACTTTGGTTATGCTGTTGTTGGTGCTCTCTTGCACAAGAAGTTAGGACTGGGAATAGTTATGAAATCTTGGAAGATAAGTTATGTATGAAAGAAATTGATACTTGTGATCAGGTTTCAATTTCATCTTTGCATAAAGAAGATGTAGTATCATCATCAACCAAATCTGGTACAAGTTCTTCTCTTGAAAGAGATAAAGATGGAACAATGAATCCACCAATAGCTTTAGTAATACAAAAAGAAGGTTCTGTATAA 1473 0.3503 MNQVDNGNKNPKDEIDESNGSQVKEFASIDILHTKKTIPTDENLHRNFLKFGSASAKFKQSVPSPHSGSIKSRFGTMFGQKLEWNSVKKMCMEWIKNPMNMALFVWIICVAVSGAILFFVMTGMLNNVLKTKSERNTWFEVNNQILNALFTLVCLYHHPKRFHYLVLLCRWKPNDISTLRMIYCKNGTYKPHEWTHMMVVIILLHVNCFAQYALCSLNLGYKRSERPAIGVGITISVAIAAPAVAGLYTILSPLGKDYNDCVMDEESQVQFEKKYAFASKDQQGVIENRPSWNGRILDIWNDLSLSHLSLFCTFCVFGWNMERLGFGNMYVHIATFMLFCMAPFWIFVLASVNIDDDNVRQALVAIGIILCFCGLLYGGFWRIQMRKRFNLPAYDFCFGKPSVSDCALWLCCCWCSLAQEVRTGNSYEILEDKLCMKEIDTCDQVSISSLHKEDVVSSSTKSGTSSSLERDKDGTMNPPIALVIQKEGSV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02156 490 PANTHER PLAC8 FAMILY PROTEIN-RELATED 14 487 - -
Trre5g02156 490 Pfam Protein of unknown function (DUF2985) 93 171 IPR021369 -
Trre5g02156 490 MobiDBLite consensus disorder prediction 457 472 - -
Trre5g02156 490 NCBIfam uncharacterized Cys-rich domain 291 423 IPR006461 -
Trre5g02156 490 Pfam PLAC8 family 292 422 IPR006461 -
Trre5g02156 490 MobiDBLite consensus disorder prediction 457 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02156 Trre-Chr5 16190341 16191813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02156 - - tpra:123894848 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02156 5 16190341 16191813 Trre9g04431 9 51952094 51953779 ECH
Trre5g02156 5 16190341 16191813 Trre5g02156 5 16190341 16191813 ECH
Trre5g02156 5 16190341 16191813 Trre9g04431 9 51952094 51953779 PCT