Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02088 ATGTCTTCTAAACCAAAAAAACAGACTTACAGCGTTTGTTTCTGTTGCCGGCGCCGGTTTAAGCTCGGCGTATCGGAAGCACCACCGGAGATAAAAGAACTTTTCCATCGTTACTGTGATGAAAATGGGATCATGACTGCTTCTCATCTCAAAAGGTTCCTTATTGAGGTCCAGAAACAAGAAGACAATATCACAGATGAAGAATTACAAGCTATCATTGATAGTCAGAAACATTTGAGTATCTTTCATCGTAGAGGTTTCAATCTTGAAACTTTCTTCAAGTTTCTCTTCAGTGATAGTAATCCTCCTCTTGTTCCTTCTCGTGGGGTGCATCATGATATGAGTTTACCATTGTCTCATTATTACATATACACTGGTCATAATTCATATCTAACTGGAAATCAGCTTAGTAGTGATTGCAGTGATGCCCCTATTATCCATGCACTTCAGAGAGGTGTAAGGGTTATTGAATTAGATATATGGCCTAATGCATCTAAGGAAGATGTTGATGTTCTTCATGGAAGGACATTGACGACTCCTGTGGCGCTTATAAAATGTTTGACATCTATTAAGGAGTATGCGTTTGTTGCGTCAGAATATCCTGTTGTAATAACCTTGGAAGACCACCTTACTCCTGATCTTCAGGCAAAAGTGGCTCAGATGGTTACTCAAACATTTGGGGACATACTATTTTGTCCTAGCACAGAAGGCTTGAAGGAATTTCCTTCACCTGATTCACTTAAAAAAAGGATCATCATATCAACCAAGCCACCTAAGGAGTACCTTGAGGCAAAAGAAGGAAAGGAAAAGGAGGAATCACAGAAGGGAAAGCCTGCAGATGATGAAGAAGCTTGGGGCAAAGAAGTTCCTAGTTTGAGAGGGGGTACCATAGCTGATTACAAGCAGAACACTGGGGATGATGACGATGATCTTAGTGACGATGAAGATGATGACGAGGAAAAGTCACGTCAAGATGGATCGGATGAATATAGACGTTTAATTGCTATTCATGCCGGCAAACCTAAAGGTGGAATAGTGGAATGTCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAATCACAACTCGAAAAGGCTGCTGAAACATATGGAAAAGAAATTGTCAGGTTTACTCAGCAGAATATACTGAGAGTGTATCCGAAAGGTACACGCATTACCTCGTCAAATTATAATCCATTAATTGGGTGGATGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTACGGAAGATCTCTTTGGTTGATGCAAGGAATGTTTAAAGCCAATGGCAGATGTGGTTATGTTAAAAAACCAGATTTTCTGTTAAAAACTGGTCCCATTAATGAGATTTTTGATCCTAAAGTTCCTTTACCGCCGAAAACTACTTTGAAGGTGACTGTATATATGGGGGAAGGTTGGTATTATGATTTCAAGCATACACACTTTGATCAATTCTCACCTCCAGACTTCTATGCAAGGGTTGGGATTGCTGGTGTTCCATCTGATACTGTTATGAAAAAAACTAAGTCAATAGAGGATAGTTGGTTGCCTTCTTGGAATGAGGTATTCGAGTTCAAACTTTCTGTTCCGGAGTTGGCGCTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAAAAGGATGACTTTGGCGGGCAAACATGTTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCAATTCCACTTCATTCCCGCAAAGGTGATAAATACAACAATGTAAAGCTTCTCATGCGCTTTGAATTCATCTGA 1788 0.4027 MSSKPKKQTYSVCFCCRRRFKLGVSEAPPEIKELFHRYCDENGIMTASHLKRFLIEVQKQEDNITDEELQAIIDSQKHLSIFHRRGFNLETFFKFLFSDSNPPLVPSRGVHHDMSLPLSHYYIYTGHNSYLTGNQLSSDCSDAPIIHALQRGVRVIELDIWPNASKEDVDVLHGRTLTTPVALIKCLTSIKEYAFVASEYPVVITLEDHLTPDLQAKVAQMVTQTFGDILFCPSTEGLKEFPSPDSLKKRIIISTKPPKEYLEAKEGKEKEESQKGKPADDEEAWGKEVPSLRGGTIADYKQNTGDDDDDLSDDEDDDEEKSRQDGSDEYRRLIAIHAGKPKGGIVECLKVDPDKVRRLSLSESQLEKAAETYGKEIVRFTQQNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGRCGYVKKPDFLLKTGPINEIFDPKVPLPPKTTLKVTVYMGEGWYYDFKHTHFDQFSPPDFYARVGIAGVPSDTVMKKTKSIEDSWLPSWNEVFEFKLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAIPLHSRKGDKYNNVKLLMRFEFI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02088 595 Gene3D C2 domain 460 595 IPR035892 -
Trre5g02088 595 PRINTS Phospholipase C signature 143 163 IPR001192 GO:0035556
Trre5g02088 595 PRINTS Phospholipase C signature 240 257 IPR001192 GO:0035556
Trre5g02088 595 PRINTS Phospholipase C signature 406 424 IPR001192 GO:0035556
Trre5g02088 595 PRINTS Phospholipase C signature 561 571 IPR001192 GO:0035556
Trre5g02088 595 PRINTS Phospholipase C signature 117 135 IPR001192 GO:0035556
Trre5g02088 595 PRINTS Phospholipase C signature 385 406 IPR001192 GO:0035556
Trre5g02088 595 SMART plcy_3 330 447 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02088 595 SUPERFAMILY EF-hand 21 113 IPR011992 -
Trre5g02088 595 MobiDBLite consensus disorder prediction 260 288 - -
Trre5g02088 595 CDD PI-PLCc_plant 111 434 - -
Trre5g02088 595 Gene3D - 26 107 - -
Trre5g02088 595 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 15 594 IPR001192 GO:0035556
Trre5g02088 595 MobiDBLite consensus disorder prediction 306 323 - -
Trre5g02088 595 SMART C2_3c 467 575 IPR000008 -
Trre5g02088 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 112 256 - -
Trre5g02088 595 Pfam Phosphatidylinositol-specific phospholipase C, X domain 114 256 IPR000909 -
Trre5g02088 595 SMART plcx_3 112 256 IPR000909 -
Trre5g02088 595 Coils Coil 50 70 - -
Trre5g02088 595 FunFam Phosphoinositide phospholipase C 462 595 - -
Trre5g02088 595 Pfam C2 domain 468 568 IPR000008 -
Trre5g02088 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 360 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02088 595 CDD C2_PLC_like 465 594 - -
Trre5g02088 595 Gene3D Phosphatidylinositol (PI) phosphodiesterase 108 459 IPR017946 GO:0006629|GO:0008081
Trre5g02088 595 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 467 594 IPR035892 -
Trre5g02088 595 MobiDBLite consensus disorder prediction 260 330 - -
Trre5g02088 595 SUPERFAMILY PLC-like phosphodiesterases 112 448 IPR017946 GO:0006629|GO:0008081
Trre5g02088 595 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 359 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02088 595 ProSiteProfiles C2 domain profile. 448 577 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02088 Trre-Chr5 15523970 15527224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02088 7 595 Acyl Lipid Metabolism Gene Families AT3G55940 67.622 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02088 K05857 - gmx:100784534 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02088 5 15523970 15527224 Trre9g04357 9 51371351 51375632 ECH
Trre5g02088 5 15523970 15527224 Trre5g02088 5 15523970 15527224 ECH
Trre5g02088 5 15523970 15527224 Trre9g04357 9 51371351 51375632 PCT