Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02056 ATGGTTGATTTACATTGGAAATTAAACATGCCCAATTCAGACATGTCTTCCAAATCTCCAAAACTTTCTCTCTCCGAGAAATCCTCACCACGCAAATCCCTACCCTCGTTACAACTACCTTCAATCACCAGCGACATAGCCGCGGCGGCGCCACCACTTTGTGCGGCTTACGACCACTATCTCCGTCTCCCGGAGCTTCGTAAACTTTGGGAAACAACAGAATTCCCTAACTGGAGCAACGAATCAATCATTAAACCAGCTTTACAAGCACTCGAAATCACGTTCCGTTTCATCTCTACGGTTCTCTCCGACCCAAGACCCTACGCGAACCGTACAGAATGGAACCGTAGACTTGAATCCATCGCCACGCGTCAGATTGAGATTATCGCCATGCTTTGCGAAGAGGAGGAACAAAATCCAGAGACACGTGGCACAGTGCCAACCGCTTATCTCAGCAGCGGCGATAGCAAAATCAGAAGCTATAGTGAAACGAGTCTTCTTCCAATTCTCGCCACGTGGTACAAATCCAAGGATGTAGCACAGAGGATTCTTCTCTCCGTCGAGTGTCAAATGATGAGGTGTTCTTATACGTTAGGTTTGGGTGAACCGAACCTCGCTGGAAAACCGAGCCTCAAATACGACACCGTTTGTAAACCAAACGAAGTTCACGCTCTCAAAACGACGCCGTATGACGACCGAATCGATAACTACGAGAATCACGCTGTGCACGCAACGCACCAGATCGTGGAATCATGGATCCACGTTTCACGGAAGCTTCTAGAAAGAATCGTTGAATCAATCGAAGGAAAAAAATTGGAGAAAGCAACGGAGGATTGTTACACGGTAGAGAGGATCTGGAAGCTTCTAACGGAGGTTGAAGATATTCATCTGATGATGGATCCAGGTGATTTCTTGAAGCTGAAGAATCAATTATCTATGAAATCTTCTCGTTATGAAACGGCAGCGTTTTGCATGAGATCGAAGGAGTTGGTTGAAGTAACTAAGATGTGTAGAGATTTGAGGCACAGAGTACCGGAGATATTGGAAGTGGAGGTTGATCCGAAAGGTGGACCAAGGATTCAAGAGGCGGCGATGAAGCTTTACGTGGCGGAGAAAATGAGTGGATTCGAGAAGGTTCATTTGTTGCAGGGTATGCAAAGTATTGAGGTTGCTATGAAGAGATTTTTCTATGGTTACAAACAGGTGTTGGCGGTGGTAATGGGGAGTTCTGAGGCTAATGGAAACCGAGTTGGGATGAGTTGTGATGGCGGTGACTCGTTGACTCATATGTTCCTTGAACCTACCTACTTTCCAAGCTTGGATGCTGCTAAGACTTTTCTTGGATACTTTTGGGATAATGATAATAAATGGGTGTGA 1377 0.4582 MVDLHWKLNMPNSDMSSKSPKLSLSEKSSPRKSLPSLQLPSITSDIAAAAPPLCAAYDHYLRLPELRKLWETTEFPNWSNESIIKPALQALEITFRFISTVLSDPRPYANRTEWNRRLESIATRQIEIIAMLCEEEEQNPETRGTVPTAYLSSGDSKIRSYSETSLLPILATWYKSKDVAQRILLSVECQMMRCSYTLGLGEPNLAGKPSLKYDTVCKPNEVHALKTTPYDDRIDNYENHAVHATHQIVESWIHVSRKLLERIVESIEGKKLEKATEDCYTVERIWKLLTEVEDIHLMMDPGDFLKLKNQLSMKSSRYETAAFCMRSKELVEVTKMCRDLRHRVPEILEVEVDPKGGPRIQEAAMKLYVAEKMSGFEKVHLLQGMQSIEVAMKRFFYGYKQVLAVVMGSSEANGNRVGMSCDGGDSLTHMFLEPTYFPSLDAAKTFLGYFWDNDNKWV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02056 458 MobiDBLite consensus disorder prediction 11 36 - -
Trre5g02056 458 Pfam Hs1pro-1 protein C-terminus 191 453 IPR009743 -
Trre5g02056 458 Gene3D - 211 446 - -
Trre5g02056 458 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 456 IPR038759 -
Trre5g02056 458 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 213 447 IPR037217 GO:0019441|GO:0020037|GO:0046872
Trre5g02056 458 Pfam Hs1pro-1 N-terminus 1 188 IPR009869 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02056 Trre-Chr5 15310419 15311795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02056 - - psat:127083938 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02056 5 15310419 15311795 Trre5g02056 5 15310419 15311795 ECH
Trre5g02056 5 15310419 15311795 Trre9g04333 9 51136759 51138087 PCT