Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02002 ATGGCTCAAATCACTCTTATTTCTCCAACAACCGTCATAGCTATTACTGGTAGGAGAAAGCAACTAAGTGAAATATCTGGTGCAAGTGTAAGGTACAAATTGAGCTCACTATCACCACATGTGAATTGGAATATTCAAAAGCATATTCCATGGTTTGGTTTCACTACTTCATCAAATTATTATTCTTATGGTAAGAATAATACAAGTGGCGTGGTGAATATTTCTGAAGGAGGAGCTATATCTGTTCCTCATAGTTGGCCACTTGAAAAGGTATCTGAAGATCAAAAGGGTTCAAAAATGAAAGGTTCATCACGTTTCTTCACAATAGGTCTTGTAGCAGCATGGTATTCATCCAACATTGGTGTTCTTCTATTGAACAAGTATTTGTTAAGCAATTATGGTTTCAAGTATCCTATTTTTCTTACCATGTGTCATATGACAGCTTGTTCTTTATTTAGCTATGTTGCTATAGCATGGATGAAGATTGTTCCTATGCAAACAATTCGATCCAGGGTTCAATTCTTTAAGATCTCTGCTTTAAGTTTGATTTTCTGTGTTTCTGTTGTGTTTGGGAATATTTCTCTTCGGTATCTTCCTGTTTCTTTCAATCAGGCTATCGGCGCAACTACGCCTTTTTTTACTGCCATTTTTGCTTATATTATGACTTTTAAGAGGGAGGCTTGGCTCACTTATCTTACCCTTGTTCCTGTTGTTACTGGTGTTGTTATTGCTAGTGGGGGTGAACCAAGTTTCCATTTATTTGGATTCATTGTATGTATTGCGGCTACAGCTGCAAGAGCCCTGAAATCAGTGCTACAAGGAATTTTGCTTTCTTCTGAAGGAGAGAAGCTCAATTCAATGAACCTCCTCCTTTACATGGCTCCAATGGCTGTTGTTTTCCTTCTTCCCGCTACACTTATAATGGAAGAAAATGTGGTTGGCATCACCTTGGCTCTAGCCAGAGATGATGTTAAGATCATTTGGTATCTGCTATTCAACTCAGCTCTTGCCTATTTTGTCAACCTGACCAATTTTTTGGTCACGAAACATACTAGTGCTCTAACCCTTCAGGTACTAGGGAATGCTAAAGGCGCTGTAGCAGTAGTAGTTTCAATCCTAATATTTAGAAACCCAGTTTCAGTCACTGGAATGATGGGTTACGCGCTCACAGTCATTGGAGTAATTCTTTACAGCGAAGCCAAAAAGCGAACAAAGTGA 1218 0.3867 MAQITLISPTTVIAITGRRKQLSEISGASVRYKLSSLSPHVNWNIQKHIPWFGFTTSSNYYSYGKNNTSGVVNISEGGAISVPHSWPLEKVSEDQKGSKMKGSSRFFTIGLVAAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLFSYVAIAWMKIVPMQTIRSRVQFFKISALSLIFCVSVVFGNISLRYLPVSFNQAIGATTPFFTAIFAYIMTFKREAWLTYLTLVPVVTGVVIASGGEPSFHLFGFIVCIAATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLIMEENVVGITLALARDDVKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMMGYALTVIGVILYSEAKKRTK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02002 405 Pfam Triose-phosphate Transporter family 111 398 IPR004853 -
Trre5g02002 405 PANTHER SOLUTE CARRIER FAMILY 35 108 402 - -
Trre5g02002 405 SUPERFAMILY Multidrug resistance efflux transporter EmrE 296 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02002 Trre-Chr5 14917342 14924030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02002 99 405 Organic Solute Cotransporters AT3G11320 90.879 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02002 - - gmx:100785614 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02002 5 14917342 14924030 Trre9g04295 9 50826320 50829321 ECH
Trre5g02002 5 14917342 14924030 Trre5g02002 5 14917342 14924030 ECH
Trre5g02002 5 14917342 14924030 Trre9g04295 9 50826320 50829321 PCT