Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01939 ATGGCAGTGGCTGAAGAGTGCAGTTCCAGCAGAGCCTCAAGATGGTCCCTCAAAGGAATGACTGCTCTTGTCACTGGTGGAACTCGTGGGATTGGACATGCCATAATTGAGGATTTATGTGGGTTTGGTGCCATCGTCCACACTTGTTCCAGAAACCAAACAGAACTCAATAATTGTTTGGATCAATGGCGTAGTAAAGGCTTTTTGGTTTCTGGATCTGTTTGTGATGTGTCATCTCAAGATCAAAGGGAGAAGCTAATTCAAGAAGTTACCTCAATCTTCAATGGCAAACTTCACATTTATGTGAACAATGTTGGAGCAAACTTTAGGAAACCAACCATTGAGTACACTGCTGAAGCATCTGGAATGGGAAGCATTGTATTCATTTCATCTATTGCTGGTGTGGTGAGCTTAGGTACAGGATCAGTCTATGCAGCAAGTAAAGCTGCAATCAATCAGCTTACAAAAAATTTGGCTTGTGAATGGGCAAAAGATGGCATAAGGAGCAATTGTGTTGTTCCTGCTACCACTAATACACCACTTGTTGAACATCTACTTCGCAACAAGCAGTATGTAGACGAAATGTTGTCTCGAACTCCTCTTGGACGTATCGCTGAAGCTCAAGAGATTTCATCCTTGGTGTCTTTCCTTTGTCTTCCGGCTGCGTCTTACATCACAGGACAGGTTATTTGTGTTGATGGAGGATTGACAGTGAATGGATTTCAGCCTAGTATGAGAATAACATAA 747 0.4244 MAVAEECSSSRASRWSLKGMTALVTGGTRGIGHAIIEDLCGFGAIVHTCSRNQTELNNCLDQWRSKGFLVSGSVCDVSSQDQREKLIQEVTSIFNGKLHIYVNNVGANFRKPTIEYTAEASGMGSIVFISSIAGVVSLGTGSVYAASKAAINQLTKNLACEWAKDGIRSNCVVPATTNTPLVEHLLRNKQYVDEMLSRTPLGRIAEAQEISSLVSFLCLPAASYITGQVICVDGGLTVNGFQPSMRIT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01939 248 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Trre5g01939 248 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 IPR002347 -
Trre5g01939 248 Pfam Enoyl-(Acyl carrier protein) reductase 122 237 - -
Trre5g01939 248 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 239 IPR036291 -
Trre5g01939 248 Gene3D - 120 247 - -
Trre5g01939 248 PRINTS Glucose/ribitol dehydrogenase family signature 200 220 IPR002347 -
Trre5g01939 248 PRINTS Glucose/ribitol dehydrogenase family signature 118 134 IPR002347 -
Trre5g01939 248 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Trre5g01939 248 PRINTS Glucose/ribitol dehydrogenase family signature 144 163 IPR002347 -
Trre5g01939 248 PRINTS Glucose/ribitol dehydrogenase family signature 165 182 IPR002347 -
Trre5g01939 248 PANTHER TROPINONE REDUCTASE 120 240 IPR045000 GO:0016491
Trre5g01939 248 Pfam short chain dehydrogenase 21 119 IPR002347 -
Trre5g01939 248 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 131 159 IPR020904 GO:0016491
Trre5g01939 248 Gene3D - 2 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01939 Trre-Chr5 14429472 14432026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01939 14 243 Miscellaneous Gene Families AT2G29290 56.420 2.27e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01939 K08081 - gmx:100775806 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01939 5 14429472 14432026 Trre5g01939 5 14429472 14432026 ECH
Trre5g01939 5 14429472 14432026 Trre13g01410 13 11415626 11424315 ECH