Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01923 ATGAATCAAGATCGGTTGGAAACTTTTCATGACCCTCTTAAAATAACAAGATTACCTTTTATACCCGAAAAAATAGGTGACATGGTTTCAATCTCAATAAGAATTGGCATACTTATCTGCCTTATAGCATCGATAACACTTGCTTTCCATTCAACATTCGCTAAACCAGATCGGTGGTTTCCATTACCGGAGCATTTACACGTTATAAAGAATGTTTCAGTCATTCAAATTGACAATGGACCAACAAACATTTCACATATTGTATTTGGCATTGCCGGTTCATCAAACACGTGGCATAGCCGAAGCAACTACAGCAAACTTTGGTGGAATCCAAACACTTGCAGAGGTTTTGCTTGGCTCGACAAGAAACCGAGTGATTTTAAGTCAGACCATATGATAATTCCGTATAAAATCTCAAAAGGTTGGACCCGGTTCAGACACGTGCACTCTGCATCCGCAGTTCGGATAGCGCGGATAGTTTACGAAAGCTTTAGACTTGGTCTCCCAAATGTAAGGTGGTTTGTAATGGGAGACGATGATACAGTGTTTTTTCCGGAGAATTTAGTAACAGTGTTGGGAAAATATGATCACAATAAATTGTATTATATTGGTGGAAATTCTGAGAGTGTGGAGCAAGATTTGATGCATTGTTTTGATATGGCATTTGGTGGTGGTGGAATTGCCATTAGTTATGCACTAGCAGTTAGACTATCCCAAATTATGGATTCTTGTCTTCATAGATACTATTGGTTTTATGGCTCTGATCAAAGAATTTGGGCTTGTGTAAATGAATTAGGAGTACCTCTTACAAGAGAAAGGGGATTCCATCAGCTTGACATTAAAGGGAATCCTTATGGTCTTTTAGCCGCACACCCTTTGGCACCACTCGTGTCACTCCATCACCTTGATCAATTAGACTCATTGTTTCCGGACCAAAGTCAAATGCATTCATTGACAAAGCTTATCAGTGCATACCACCTTGACCCTGCAAGGATAGTGCAGCAAAGTGTTTGTTATGATCATAGGCGTAAATGGTCTATATCTATTTCGTGGGGCTACACAATACAAATCTATACATCGTTGGTGATAATAGCTGATTTGCAAATGCCATTTCAAACGTTTAAAACATGGCGAAGTTCAAGTGATGGTCCTTTCACATTTAATACTCGATGGCTGAACCCTGACGAATGCCAGCAGCCATCTATATTTTTCCTGGATAAGGTTAGAAAGGTGGGCACTGGAAGTGTCACTACCTATAAGAGATATTTTGGCAAGGAAGGAAAGAAGTGCAAGAGAGCAGATGGAGAAGTGCAGAGAATTAAAGTTTCTGTCTTGAAACTGGATTCAGAATATTGGAAGAATGTACCACGTAGGCAATGCTGCCAATTTATGGATGGTGGAAGCATAAAAGCTGGAAGTGTTCATATCAGAATTAGGAAGTGCAGACCTCAGGAAACAATTACTATTTAG 1470 0.3966 MNQDRLETFHDPLKITRLPFIPEKIGDMVSISIRIGILICLIASITLAFHSTFAKPDRWFPLPEHLHVIKNVSVIQIDNGPTNISHIVFGIAGSSNTWHSRSNYSKLWWNPNTCRGFAWLDKKPSDFKSDHMIIPYKISKGWTRFRHVHSASAVRIARIVYESFRLGLPNVRWFVMGDDDTVFFPENLVTVLGKYDHNKLYYIGGNSESVEQDLMHCFDMAFGGGGIAISYALAVRLSQIMDSCLHRYYWFYGSDQRIWACVNELGVPLTRERGFHQLDIKGNPYGLLAAHPLAPLVSLHHLDQLDSLFPDQSQMHSLTKLISAYHLDPARIVQQSVCYDHRRKWSISISWGYTIQIYTSLVIIADLQMPFQTFKTWRSSSDGPFTFNTRWLNPDECQQPSIFFLDKVRKVGTGSVTTYKRYFGKEGKKCKRADGEVQRIKVSVLKLDSEYWKNVPRRQCCQFMDGGSIKAGSVHIRIRKCRPQETITI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01923 489 PANTHER FRINGE-RELATED 35 487 - -
Trre5g01923 489 FunFam Fringe-related protein-like 75 326 - -
Trre5g01923 489 Pfam Protein of unknown function, DUF604 212 461 IPR006740 -
Trre5g01923 489 Gene3D - 76 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01923 Trre-Chr5 14340374 14342494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01923 10 487 Glycosyltransferase AT3G11420 53.012 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01923 - - gmx:100802549 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01923 5 14340374 14342494 Trre5g01923 5 14340374 14342494 ECH
Trre5g01923 5 14340374 14342494 Trre13g01406 13 11373102 11377323 ECH