Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01406 ATGTCTTCTTCTTCGGTAGAATCAGTTCGAGAACTTCTCAACAAACCATGGAAAACCATTCCCTTTCCCACCATTAAATCCAGCGATCTCTTCTCTCTCTTCCTCAAAGTGGGTTTAGGAATTTCCACCATTTTTCTTATCTCCCATCTCTTCTACCTCTCTCTCAATTACCACCAACCACAAAACCACTATGATCAATTAGCCTTAAAAGAAATGTTCCAACGCCGCACCCCAAAAACACTAATCATTGACTCCGGCCCTGCCGAACAGCCTGCTGCCGCAGTTGAAGAGCCCACCAAGATCTCCCACGTCTTGTTTGGAATTGGCGGCTCTTATGTTACCTGGAACACACGCCATTTCTATAGCGAACTCTGGTGGCGTCAAAACGTCACCAGAGGCTTTGTGTGGATAGATAAAGAGCCGCCAATAAACGAGACGTGGCCAGAGACTTCTCTACCGTATAAAGTCTCTGCTGACACGTCATCATTTAAATACACTTGTTGGTATGGGTCTCGTTCAGCAATTCGCATAGCGCGAATACTGAAGGAGAGTTTTGAATTAGGGTTAGATAATGTGAGGTGGTTTGTCATGGGCGACGACGACACGGTTTTCTTTACCGACAACCTAATTACGGTGTTGTCGAAATACGATCACAATCAAATGTACTATATTGGTGGAAATTCGGAAAGTGTGGAACAAGATGTGATACATTTTTACACCATGGCTTATGGCGGCGGAGGATTTGCTATAAGTTATCCTTTGGCGGCGGAGCTTGTGAAGATATTGGACGGTTGCATTGATAGGTATTCTGAATATTATGGTTCTGATCAGAAAGTTCAGAGTTGCATTAGTGAAATTGGCGTTCAGATTACCAAAGAGCCTGGTTTTCATCAGGTTGATATACGTGGCAACCCATATGGCTTATTAGCAGCACACCCAGTAGCACCATTGGTATCATTACATCACTTAGATTACGTGGACTCAATTTTCCCAAACATGCCACGTGTCGAATCAGTCAAAAGATTAATGACCGGTTACAAGTTGGATCCGGGTCGGACTGTCCAACAAACATTTTGCTACGACCATACCCGAAATTGGTCCGTTTCAGTTTCATGGGGCTATAGTGTTGAATTATATCCATTTTTACTAAGGGCTAAAGATCTTGAAACGGCGTTTAGAACTTTTAAAACGTGGAGAAGTTGGAGTGAAGGCCCGTTTACGTTTAATACCCGACCCGTTAGTGGTGATCCATGTGAAAAACCCTTGGTTTATTTTATGGATCGGGTTGTTGATGTTGGTGAAGGATTGACCCGGTCTGGGTATACGAGAAACGACGACGTTTCGGGGAAGGTGTGTGAGAGGGATGATTATTTAGAAGTTTTGGGAGTAGAATACATCAACGTTTCGGCGCCTTTGCTTTTGCCTAATTATTGGAAAGAGGCACCACGTAGACAATGTTGTGAGATAATCAACGATGCAGATAGTGTAGACAATGTGGTTAATGTCAAGATTAGAGGATGTCAACAATTTGAGAGTGTGACTCCTCGTTAG 1551 0.4339 MSSSSVESVRELLNKPWKTIPFPTIKSSDLFSLFLKVGLGISTIFLISHLFYLSLNYHQPQNHYDQLALKEMFQRRTPKTLIIDSGPAEQPAAAVEEPTKISHVLFGIGGSYVTWNTRHFYSELWWRQNVTRGFVWIDKEPPINETWPETSLPYKVSADTSSFKYTCWYGSRSAIRIARILKESFELGLDNVRWFVMGDDDTVFFTDNLITVLSKYDHNQMYYIGGNSESVEQDVIHFYTMAYGGGGFAISYPLAAELVKILDGCIDRYSEYYGSDQKVQSCISEIGVQITKEPGFHQVDIRGNPYGLLAAHPVAPLVSLHHLDYVDSIFPNMPRVESVKRLMTGYKLDPGRTVQQTFCYDHTRNWSVSVSWGYSVELYPFLLRAKDLETAFRTFKTWRSWSEGPFTFNTRPVSGDPCEKPLVYFMDRVVDVGEGLTRSGYTRNDDVSGKVCERDDYLEVLGVEYINVSAPLLLPNYWKEAPRRQCCEIINDADSVDNVVNVKIRGCQQFESVTPR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01406 516 FunFam Fringe-related protein-like 91 347 - -
Trre13g01406 516 Gene3D - 91 348 - -
Trre13g01406 516 PANTHER FRINGE-RELATED 43 511 - -
Trre13g01406 516 Pfam Protein of unknown function, DUF604 233 487 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01406 Trre-Chr13 11373102 11377323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01406 11 516 Glycosyltransferase AT2G37730 58.171 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01406 - - psat:127127590 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01406 13 11373102 11377323 Trre13g01406 13 11373102 11377323 ECH
Trre5g01923 5 14340374 14342494 Trre13g01406 13 11373102 11377323 ECH