Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01902 ATGGTGTTGAAGAAAAGGGTAAATAATGGATTCACTGGCTTTCAAGTTCCGGTTATTCCTAAAGCTCCTAGATCTGCAAGAGGAAGGGGTCCATTGAAAAAAACAGTTGAGGATGGTCAAGTTTGTGCTTTTGAAATATTGGCATCGATAGCTGGCAAGCTGTTGGAGGAGAGTGTAAGTTCTGCTTCTAGCAATGCATCCGAAGGAAATAGTCAAGGTGTCATTGTGCAAGATCGACAAGATGAAGGTAAACCAACGATAATGGAGGGAATTCATCAAGGAAGCTGTACAGAGAGTATTTTTACAACTGACGTAGCCTCACAAAACCGTGATCAGAAACCTCTTCTGCACGTGAAGTCCGATTTTTCATCGGAAAAATCTGAAAAAGCTAATGTGAAGACTGAAACGGTTGAATCATATAATAAATATGGAAGTTATACTAATAGATTAGTAGAAGCACCTGTAAATTTCAGGGAGTCTTGTAACAGGAAAATTAAGAAAGGATTCAGATATGATAAATGTGGTTTGAAAGATCGGCTAGAATTGTATATGTCTCCTTCTCTGGTCGACTCAAAAATTAATGTAAAATATCCACTTTATAGGAAGCCGTTTCCCACCGATTCCTTTACCAAGCGTGGGAATGGCATTAAGATAGATTTTAGAGATGATGACGAAAACTTTTTAAGGTGCACAAAAGTTTGCACCAAGTCGAAGGCCTTTAGGTCTCCACGACGCATGGCACACCGTAGAATCAAGAATCTGCTGTCTTCCAAATACTGGAACGTTGCTCCAAAGTTGAAGGACTGTGAGATTTCTAGATCTGATCTAGAAGTACCTCTTTACCGTAAGAGGAAGACTTGTAACAACTCCGACAGATCTCGCCACAGCACCATTGTTAAGAGGAGGAAATTCTTTGACCGGGTTTCTGGAGTAACTTCTGATGGAGGATTTAGCAGTGAGAGTGTGTCAAATTCGCCTGAGAAAGGAACGGATGGACACAAGCCTAGCTCCTCTTCAAAACTGCAAGTAACCGAGGATTCTCATGTGAAATTTCGCATTAAGTCGTTTAAGATACCAGAGCTTTACATTGAGGTTCCCGAAACTGCAACTGTTGGTTCACTAAAGAGGACAGTCATGGAGGCAGTTATGGCTATAATTGGAGGCGGTATGAATGTTGGTGTTTTTCTTCAGGGCGAAGAAATTGGAGATGACAATAGAACACTCGAGCAAACTGGTTTATCTTGCAATGAGAATCTGGATGCCCTCAGTTTCATGTTGGAGCCTAGTTCTCTACTAGCTTCTCCTGTTTCTTGTGTTGGTGATCCTTCTTCTCAATGCGAAACATCCGAACCTACAAGGTCTCCGGAAACTCCTGCATTAGATTCAGGGATATCTGATCCCGTGCGTGACTTCAATTTGCCGACAAATCAAGACACTCTAGTTGAAAATAACCATGACTCTACTTGTTCACTTACTGACACCATAGTTGACAATACAACACCAGATCATTCCAGAGCGATTGTTGCTCTTCCGGCTAGTACCGAAGCATTAGCTGTGGTCCCTGTGAGTCAGAAAGTCAAGCGTTCCGAGTTTATACATCGTCGAACCAGGAGACCATTCTCTGTGACTGAGGTAGAAGCACTTGTTCATGCAGTTGAAGAACTTGGGACTGGAAGGTGGCGCGATGTTAAGTTGCGAGCTTTTGAGAATGCGGATCATAGAACTTATGTAGATTTGAAGGATAAATGGAAAACACTAGTGCACACTGCGAAAATCTCCCCTCAACAAAGGAGAGGAGAGCCGGTACCTCAGGAGTTATTGGACAGAGTTTTAGGAGCACATGCTTACTGGTCTCAGCACCAAATCAAGCAACATGGAAAGCATCAAGGTGCAACAGGAACAACATTGAAGATTACAGAAACCTCAGCTGAAAGGGTGTCCATTCATGTGTAG 1953 0.424 MVLKKRVNNGFTGFQVPVIPKAPRSARGRGPLKKTVEDGQVCAFEILASIAGKLLEESVSSASSNASEGNSQGVIVQDRQDEGKPTIMEGIHQGSCTESIFTTDVASQNRDQKPLLHVKSDFSSEKSEKANVKTETVESYNKYGSYTNRLVEAPVNFRESCNRKIKKGFRYDKCGLKDRLELYMSPSLVDSKINVKYPLYRKPFPTDSFTKRGNGIKIDFRDDDENFLRCTKVCTKSKAFRSPRRMAHRRIKNLLSSKYWNVAPKLKDCEISRSDLEVPLYRKRKTCNNSDRSRHSTIVKRRKFFDRVSGVTSDGGFSSESVSNSPEKGTDGHKPSSSSKLQVTEDSHVKFRIKSFKIPELYIEVPETATVGSLKRTVMEAVMAIIGGGMNVGVFLQGEEIGDDNRTLEQTGLSCNENLDALSFMLEPSSLLASPVSCVGDPSSQCETSEPTRSPETPALDSGISDPVRDFNLPTNQDTLVENNHDSTCSLTDTIVDNTTPDHSRAIVALPASTEALAVVPVSQKVKRSEFIHRRTRRPFSVTEVEALVHAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLDRVLGAHAYWSQHQIKQHGKHQGATGTTLKITETSAERVSIHV 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01902 650 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 629 IPR031105 -
Trre5g01902 650 Gene3D - 525 629 - -
Trre5g01902 650 MobiDBLite consensus disorder prediction 441 467 - -
Trre5g01902 650 FunFam Telomere repeat-binding protein 1 526 629 - -
Trre5g01902 650 CDD SANT_TRF 538 588 - -
Trre5g01902 650 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 532 591 IPR017930 -
Trre5g01902 650 SMART sant 536 589 IPR001005 -
Trre5g01902 650 MobiDBLite consensus disorder prediction 441 459 - -
Trre5g01902 650 MobiDBLite consensus disorder prediction 312 343 - -
Trre5g01902 650 ProSiteProfiles Myb-like domain profile. 532 587 IPR001005 -
Trre5g01902 650 SUPERFAMILY Homeodomain-like 538 619 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01902 Trre-Chr5 14086454 14089424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01902 - - gmx:100814318 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04437 11 56690895 56694838 Trre5g01902 5 14086454 14089424 ECH
Trre5g01902 5 14086454 14089424 Trre5g01902 5 14086454 14089424 ECH