Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04437 ATGGTGGCGCAGAACAGGATAAATTATGGATTTAATGGCTATCAGGTGCCAAAAAAGCCTCGTGCTGCACGATCACCTAGGAAGAGGGATACATTTCAAAGAAGCGTGGAAAACGATCGAATGTGCGCGATTGACTTATTGGCCACCGTAGCTGCCGGCACTTTATTGCAAGAGAAACAGAATCCAATCACACCTAGTGATGGATCATCGAAAAAAGATCAGCATGGATTCGTTAAAGAAGATGCAAGTACACCATTCAAAGCCGAGCTTCCTAATGAAGCAAGTTGTGACCAAAGTTTTCAACATGGATTTGTTAAGGAAGTGTGCGCAGATGCAAATAAGCCATTGAAAGCCGAGCTTTCTGACGATGGAAGTAGTGAAAAGAAATGTTTCTCTACTCTTTCTTCACAGGTGTACGATCAAAATAGCTGTTTGAAGGAAAATCTGCATCCTGAAATTGATGGTCAATCATGCATTGCTTCTATAGTAACAAGTTCTAGTGGCTCGGAGAGGTTAGTTACTGACATAATGGCGGATAGAAAAAGCCATAGTGAAACGAAAAATATCACTAGCAAAGTTGAATTAGGATCGTCTGGATATCCAGATTGTAATGATTGCAACTTAGATGTTGATGTAAGTATAGTAAAGGATGAGGTCCAAAATTCCGAGAAGGTGCCAATCGGTACTTCAGATGGAATGTGCTGTTTTGAGGATCCTGTGGATGAAAAACCTCCAACGCCGGTCAACTTAGGTGGCAATGCCAAGTTGTCGGGGTATGACGATAGCACACCTCATAGCTCATTGTTCAAAGGTTGCGACAATGTAGCAGTAGTTGGTAGAGATGATGACGAAAACTTTTCAGGGTGTTCTCACCCTAGTTTAAAAACAAAGTCCTTTAGGTCAAAGACTTGTATAGGTGATCAAAGAATAAGGAAAAGATTGGCTTCTAAATATCGGAAAGTTGCTCGAGAATCAAAGCACGATACACTTTCTAACAATGTAGTGGATAGAAATTTCAACACAGTTTACAGCAATAGGAAGAACAGTTATAAACGCCAATTATCTCAAATGAATATTCCTTTCAAGAAGAGGAAGATTTTTGACTGCAACTCCACTTCAAATTCTAATGGATATATAAAAAATGACCACACTTATTATTCAACCAAGAATGACATGAATCAAGGCGTTTCGTGTTCATCCGCTCGAATGCGCAAAGATCCTGGAATGTCATCTTTGGAAGGATATCATCGTTCAACATTACGATCTAGAGATTCTCATGTGAAGCTTAGGATCAAGTCATTTAGAGTGCCGGAGCTTTTTATCGAGATTCCAGAAACTGCAACTGTCGCATCGTTGAAGAGAGCAGTGATGGAAGCGGTGACTACTCTACTTCGAGGTGGATTGCGTGTTGGCATGATTCTCAATGGAAAGAAACTTAGAGATGACAGTAAAACTCTACTTCAGACCGGAATTTCTCATGATAACGCGCTGGATGCTTTGGGCTTCACCTTGGAGCCTAATTCTTCTCAAAGCCTACCGATCACATGTGCTAAAGATTCTCTTGATGTTCCTAGTGCAGACATGCCTCTAACTTTAATAGGGCAACCTTCCAGTCCAGCTGTAGTTCGTCCGATTCAGAGGATTCAAGGTTTCTGCGACACTGAGCATCAAGTAACCAGTTTAAGTAACATTGTCGAAAGTGATCACGATTCAGCACCTTCTCCTATCAGTACAATAGGTGAAAAAAGATTGACAGATTCCAAAGAACTTGTTACTATTCCTGAAATGGATACGGAGGGACTAGCTGTGGTACCGGTGGACCCGAAGCCAAAGCGAACTGAGATGTCACAACGCCGCCGAATTCGTAGGCCTTTTTCTGTCGCCGAAGTGGAAGCACTTGTTGAAGCAGTTGAGAGACTCGGAACTGGAAGGTGGCGTGATGTTAAACTTCGTGCTTTTGATGATGCAAAGCATAGGACATATGTGGATTTGAAGGATAAATGGAAAACCTTGGTACACACGGCAAGAATATCTCCTCAACAAAGAAGAGGAGAGCCTGTTCCCCAAGAACTTTTGGATAGGGTCCTTACTGCTCATGCATATTGGTCCCAACACCAACAAACTAAGCAACAACAACTCAAACATCACCCTGAAACTTGCCTTCTACTTTAA 2172 0.418 MVAQNRINYGFNGYQVPKKPRAARSPRKRDTFQRSVENDRMCAIDLLATVAAGTLLQEKQNPITPSDGSSKKDQHGFVKEDASTPFKAELPNEASCDQSFQHGFVKEVCADANKPLKAELSDDGSSEKKCFSTLSSQVYDQNSCLKENLHPEIDGQSCIASIVTSSSGSERLVTDIMADRKSHSETKNITSKVELGSSGYPDCNDCNLDVDVSIVKDEVQNSEKVPIGTSDGMCCFEDPVDEKPPTPVNLGGNAKLSGYDDSTPHSSLFKGCDNVAVVGRDDDENFSGCSHPSLKTKSFRSKTCIGDQRIRKRLASKYRKVARESKHDTLSNNVVDRNFNTVYSNRKNSYKRQLSQMNIPFKKRKIFDCNSTSNSNGYIKNDHTYYSTKNDMNQGVSCSSARMRKDPGMSSLEGYHRSTLRSRDSHVKLRIKSFRVPELFIEIPETATVASLKRAVMEAVTTLLRGGLRVGMILNGKKLRDDSKTLLQTGISHDNALDALGFTLEPNSSQSLPITCAKDSLDVPSADMPLTLIGQPSSPAVVRPIQRIQGFCDTEHQVTSLSNIVESDHDSAPSPISTIGEKRLTDSKELVTIPEMDTEGLAVVPVDPKPKRTEMSQRRRIRRPFSVAEVEALVEAVERLGTGRWRDVKLRAFDDAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQHQQTKQQQLKHHPETCLLL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04437 723 SUPERFAMILY Homeodomain-like 623 704 IPR009057 -
Trre11g04437 723 CDD SANT_TRF 623 673 - -
Trre11g04437 723 ProSiteProfiles Myb-like domain profile. 617 672 IPR001005 -
Trre11g04437 723 MobiDBLite consensus disorder prediction 1 33 - -
Trre11g04437 723 SMART sant 621 674 IPR001005 -
Trre11g04437 723 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 720 IPR031105 -
Trre11g04437 723 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 617 676 IPR017930 -
Trre11g04437 723 ProSiteProfiles Ubiquitin domain profile. 427 497 IPR000626 GO:0005515
Trre11g04437 723 SUPERFAMILY Ubiquitin-like 422 511 IPR029071 -
Trre11g04437 723 Gene3D - 611 714 - -
Trre11g04437 723 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04437 Trre-Chr11 56690895 56694838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04437 - - tpra:123897533 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04437 11 56690895 56694838 Trre11g04437 11 56690895 56694838 ECH
Trre11g04437 11 56690895 56694838 Trre5g01902 5 14086454 14089424 ECH