Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01679 ATGGTGGCCGACAAGAGCAAGAAGTTGAAAGTTTCCGACAACTCTGAGGAAATCGATGGAGAACTTGTTCTCTCTGTTGAAAAGTTGCAGGAAATTCAAGACGAACTCGAAAAGATTAATGAAGAGGCGAGCGACAAAGTTCTTGAAATCGAGCAAAAGTATAATGAGATAAGGAAACCTGTGTATGATAAGCGCAATGATCTTATCAAGTCTATTCCTGATTTCTGGCTAACTGCGTTTCAAAGCCATCCTGCTCTTGGCGAACTTTTGAACGAAGAAGATCAAAAGATATTTAAGTACTTAAGCTCTCTTGAGGTTGAAGACCATAAAGATGTCAAATCAGGCTATTCAATAACCTTCAACTTCAATCCCAATCCATATTTTGAGGATACAAAGATTGTGAAGACTTTTACCTTCCATGAAGAAGGAACAACAAAGATTACTGCTACACCCATAAAGTGGAAAGAGGGCAAGGAAGTTCCCAATGGAGGTAGTCAAGAGAAGAAAGGGAACAAGCGGCCCGCTTCTGATATCAGTTTCTTTAGCTGGTTTAGTGACACTGAGCAGAAAGATGATCTGGATGACATTCATGATGAGATTGCAGAAATGATCAAGGATGATTTATGGCCAAATCCGCTTAATTATTTCAACAATGAGGATCTTGACGAGGCAGATGAGGATGAGGATGAAGCTGGTGATGTGGGAAAGGATGATGATGACGACTCGGATGATGACGATGATGATGATGACCAAGAGGATGACGATGAGGACGAAGAATAG 780 0.4077 MVADKSKKLKVSDNSEEIDGELVLSVEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNDLIKSIPDFWLTAFQSHPALGELLNEEDQKIFKYLSSLEVEDHKDVKSGYSITFNFNPNPYFEDTKIVKTFTFHEEGTTKITATPIKWKEGKEVPNGGSQEKKGNKRPASDISFFSWFSDTEQKDDLDDIHDEIAEMIKDDLWPNPLNYFNNEDLDEADEDEDEAGDVGKDDDDDSDDDDDDDDQEDDDEDEE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01679 259 Gene3D - 1 72 - -
Trre5g01679 259 SUPERFAMILY NAP-like 12 217 IPR037231 -
Trre5g01679 259 MobiDBLite consensus disorder prediction 160 174 - -
Trre5g01679 259 MobiDBLite consensus disorder prediction 219 259 - -
Trre5g01679 259 Coils Coil 22 56 - -
Trre5g01679 259 MobiDBLite consensus disorder prediction 203 259 - -
Trre5g01679 259 Gene3D Nucleosome assembly protein 73 220 - -
Trre5g01679 259 Pfam Nucleosome assembly protein (NAP) 70 218 IPR002164 GO:0005634|GO:0006334
Trre5g01679 259 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 10 245 IPR002164 GO:0005634|GO:0006334
Trre5g01679 259 MobiDBLite consensus disorder prediction 150 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01679 Trre-Chr5 12134993 12138391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01679 K11290 - gmx:100808081 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04199 15 52626114 52631883 Trre5g01679 5 12134993 12138391 ECH
Trre5g01679 5 12134993 12138391 Trre5g01679 5 12134993 12138391 ECH
Trre5g01679 5 12134993 12138391 Trre15g04199 15 52626114 52631883 PCT