Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01344 ATGAATGATCAAGGTAGTAATACTTCCTTCGTGTCGAAAGCGAAAATTGTTATCCATTCTGCTGCTGCCAAAGCTGAACGTGTTATCAAGGACTTCAAATCTGATCTTGATTCTGATAAGCAATTGCGTGACGATTGTGGAAGGCAAAGACATCAGGGAGCTGAATCTGCTAAGAATGAGAATGAGTCAAAGTTTCTCAGTGAATTGAAGCAAATTAAGTGGAAACCTCGAAATATAGGAGGAACAAAGCAGGAATGGAAAGATAGAATTAACAACATACGAAAAGGGCGTAAAGAAAATGAAGTTACAGAAAAAGTTGGAGATACAAGCATGGCTGTTGTACCACTTTATGATGAAGATATGTGCATTGTTCATCTGAAAAAGGATCTTGATGCCAATATTTCAGAAGGATTTCTCTCGGTTGAAGGCTTAACTGCTGCGGCTAAAAGGCCTATTCCTCCATCTTCTGTCCTAAAGCAATTGGCTTTAGCTGTTGAGGCTGGAAGGAAAGCAAATTCAATGAAAGATTTTGCAGCTTCATCAGGAGATTCTTCACCTTCCAAAGAGAAGGCAGGCTTAAGTCTCACTGCGGTGAAGGCTTTAGTGTTACGCGGGAAAGAGGACAAACTTGCTTCTGAGTTTAGTAGCAATGAGAAAGTTGTGTGTTTGATTTGTTCTCTTTTTGATCCTGAGGGAGATTTCCTTAGAAGGAAAATCAACTCCAATCCGGAGGAAATTGACGTAACATCTTTTGTAAAAGATATTCATGGTGCTCCTCCTGAAAGCCTTGTTGTTAAGCTAGCTGAAGTAATCGGAAACTTTAAGACCCTTCGAGAAATGGCATTTTTTTGGTGCTGGTTTGTTGCAGAACTGCGAAAACTTTGGTCTAAAGAAAAACATTTACCTGGAGTCCCTCTTGATGACATTCCAGATTTGAAGTCATGTCTTCTCTATCAACATTTTCAAGTAATTAATTGTTGCATTTCTCGGAAACAGCGGCATATCATTGCAACTGAATCGCTAGACTCTATGATGATGAAAGCAAATTCAAATAAATTAGATTCAACAAACTGTGGCGATGATACTTCTGCAAGTCGTTTATTGTATGCTCGATTAAGTACCGGAGAGCTTGTTCTTCGACTTGGTGCTCTTTCTCCATCTGGAAATATGACGTTATTGGAAACCGGCGAGCCTGCGTACTCTCCTATCACGCAGGAAGGACAGTTGCTTACAGAAGATATGATCAAAGAGAACGAGGAGTTCGTGCTGCGGACAGGGAGTCTCGGTGCCGGCTGCTCTCAACTCCTATCCGATATGCAAGCTTTCAAGGCTGCAAATCCTGGTTGTATTTGGGAAGACTTTGTGAGATGGTACTCTCCTCCTGATTGGATCGAAAGCGAAGCAAGTACTGAAGATAGTTGTTCTTCTGATGGTAGTGGTAGCGAGTCATTATCTACCAGAGGTCATCTAAGTCGACGGATGCGGAAAGAAGGTAATTTGTGGCGCGAATTCTGGGAAACATCTAAGCCAGTACCTGCTGTAAAACAGGCACCTCTCTACGACGAGGATTTGGCAGTGGAAGGGATTCTTGATGCATTTGAGGACATTCAGCCAGTTGAGCTTTTTGGGCAGCTGTTTGTTTCACTACTTGGTTTAGGATTCACAATTGCTGAACCATTGCTTTCTGGTAACGAAGACTTCTCGAAGTTGTTCAATGACTGCAAAGAGTACGTAGTTACTACCTGTCAAAGCATCAGATTCAGTGAGAAAGTTGATGAACTTGTTCAGGTATATGAAACAGTGGAGACAATGTTGCTGAATCCTGAGGAGGCACTAAAGATGATAAACCCTTCAGAAGAATCAACTGCGACTACCGGTGAAACAAAGCGTCGGTTCAAGAAGCTTAGCCATATCTTTGCCGGCAAAGATAAACTTTTGTCAAGGTCTTTTCTGAAAGATAAGATCAACGATGAAGAAAAGAAGATTCGACAATCTTTTTCGAGTTTCTTTGACAAGAAGTCGAACTTATTCTCGAAGAAGCCTCCCAAAGATGGAAACTTTTCCCCTGCTGAGACAAGTCCCTCTCTGGAAGATGATTGGACAATAATTCAAATATATAAGCAAGAATTGTAA 2133 0.4126 MNDQGSNTSFVSKAKIVIHSAAAKAERVIKDFKSDLDSDKQLRDDCGRQRHQGAESAKNENESKFLSELKQIKWKPRNIGGTKQEWKDRINNIRKGRKENEVTEKVGDTSMAVVPLYDEDMCIVHLKKDLDANISEGFLSVEGLTAAAKRPIPPSSVLKQLALAVEAGRKANSMKDFAASSGDSSPSKEKAGLSLTAVKALVLRGKEDKLASEFSSNEKVVCLICSLFDPEGDFLRRKINSNPEEIDVTSFVKDIHGAPPESLVVKLAEVIGNFKTLREMAFFWCWFVAELRKLWSKEKHLPGVPLDDIPDLKSCLLYQHFQVINCCISRKQRHIIATESLDSMMMKANSNKLDSTNCGDDTSASRLLYARLSTGELVLRLGALSPSGNMTLLETGEPAYSPITQEGQLLTEDMIKENEEFVLRTGSLGAGCSQLLSDMQAFKAANPGCIWEDFVRWYSPPDWIESEASTEDSCSSDGSGSESLSTRGHLSRRMRKEGNLWREFWETSKPVPAVKQAPLYDEDLAVEGILDAFEDIQPVELFGQLFVSLLGLGFTIAEPLLSGNEDFSKLFNDCKEYVVTTCQSIRFSEKVDELVQVYETVETMLLNPEEALKMINPSEESTATTGETKRRFKKLSHIFAGKDKLLSRSFLKDKINDEEKKIRQSFSSFFDKKSNLFSKKPPKDGNFSPAETSPSLEDDWTIIQIYKQEL 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01344 710 MobiDBLite consensus disorder prediction 673 695 - -
Trre5g01344 710 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 60 691 IPR045700 GO:0005096|GO:0043547
Trre5g01344 710 MobiDBLite consensus disorder prediction 468 491 - -
Trre5g01344 710 Pfam Rab3 GTPase-activating protein catalytic subunit 380 534 IPR026147 -
Trre5g01344 710 MobiDBLite consensus disorder prediction 468 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01344 Trre-Chr5 9429605 9434727 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01344 K18270 - gmx:100800515 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01344 5 9429605 9434727 Trre5g01344 5 9429605 9434727 ECH
Trre5g01344 5 9429605 9434727 Trre9g04984 9 55797304 55803530 PCT