Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01272 ATGACACCCTTTAACTTTTTCTTTCTATTATACTTTCTATTGATTCCAACAAGTGGTTATTTCCAACCACTTGAAGATGATGGGTTCATCTCTGGTGTTATATCTAATAAGGGTCTTGATTTTGCTAAGGATTTGTTGATAGAGAAAGGTATTGATACTATTGTTCTTCTTAAGCTTCCTGAGATTGAGAATACTGCACAAGTTCCACTTGTTGGAAATGCTAAGGTTGTTCTTTCTGATATTACAATTAAGGATGTTCAAGTTAATTCTTCTTCTGTTATGATTGGAGAGAGTGGTATAGTTATAGTTGTTTCAGGTGCTACTGTTGATTTGAGTATGAAGTGGAAGTATACTGTCAGTTCTTGGTTGATTCCAATTGGAATTACTGATCATGGGACTGCTTCAATTAAGGTTGAAGGCATGCAAGTGGGACTTACATTAAATTTAAAGAACCAAGAAGGAGGTCTTAAGTTGAGTCTCTTAGATCATGGATGCTATGTCGGTGATTTATATATAAAGTTGAACGGTGGGGCAGCTTGGCTTTACCAAGTGCTAATAGATGCTTTTCAAGAGAATATAGCATCTTCAGTGGAAGAGGGCATTTCAGATAAAATAAAAGAAGGGATAGCAAAGCTTGATAATTCTTTGCAAACTCTTCCTAAGCAAATCGCACTAGACAAAACTGCTGCACTAAATGTTTCTTTTGTTGGCAATCCCGTGTTGACTAATTCCTCTCTTGCAATTGCAATTAATGGTTTATTCACAAGGACAACTGAAGTTTTAGTACCTCAAAATTACAAGAAAGGATTTGAGGTTTCTTCTGCCTGTGGTGGTTTACCAAAAATGATAAAGGTTTCGATACATGAAAATGTATTAAAATCTGCTTCTCTAGTTTACTTCAACGCAGGTAAAATGCAAATAATTATTGATGAACTACCCGATCAGAACCTTCTGAACACTGCTGAGTGGAGATTTATAGTTCCTCAATTATACAAGCGATATCCAAACGACGACATGCAGATTAATGTCTCTGTATCTTCTCCGCCAGTTATACAAGTGGGCTACCAAGATATTGGTGCTACTCTTTCTGTAGATATAACAATTGATGTTCTAGAAGGCGGCGAAGCCATTCCTGTTGCATGTATATCAGTGGATGTTAGTGCTTCATGTGGTGTGGAAATTTTAGGGAACACAATTGCTGGTAGACTTACATTACAAAATTTTTCTGCATACTTGAAATGGAGCAAAATAGGAAAACTGCACATACATCTTATTCAGTCACTGATATCAAGCGTCCTCAAAACAGTTGTCCTACCATACTTGAATCTCCAATTAAAGAATGGATTCCCATTGCCAACTATTGATGGTTATGGATTTCAGAATACTATTATCTTGTACAATTATCCATGGATTTCAGTATGTAGTGATGTTTCCTTTATAGACGAAGACTACTATCTTATTCAACATTCAACTTATGTATCATAA 1485 0.3582 MTPFNFFFLLYFLLIPTSGYFQPLEDDGFISGVISNKGLDFAKDLLIEKGIDTIVLLKLPEIENTAQVPLVGNAKVVLSDITIKDVQVNSSSVMIGESGIVIVVSGATVDLSMKWKYTVSSWLIPIGITDHGTASIKVEGMQVGLTLNLKNQEGGLKLSLLDHGCYVGDLYIKLNGGAAWLYQVLIDAFQENIASSVEEGISDKIKEGIAKLDNSLQTLPKQIALDKTAALNVSFVGNPVLTNSSLAIAINGLFTRTTEVLVPQNYKKGFEVSSACGGLPKMIKVSIHENVLKSASLVYFNAGKMQIIIDELPDQNLLNTAEWRFIVPQLYKRYPNDDMQINVSVSSPPVIQVGYQDIGATLSVDITIDVLEGGEAIPVACISVDVSASCGVEILGNTIAGRLTLQNFSAYLKWSKIGKLHIHLIQSLISSVLKTVVLPYLNLQLKNGFPLPTIDGYGFQNTIILYNYPWISVCSDVSFIDEDYYLIQHSTYVS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01272 494 SMART bpi2_2 277 473 IPR001124 GO:0008289
Trre5g01272 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 34 243 IPR017943 GO:0008289
Trre5g01272 494 Gene3D - 37 217 - -
Trre5g01272 494 Pfam LBP / BPI / CETP family, N-terminal domain 38 210 IPR017942 GO:0008289
Trre5g01272 494 PANTHER OS06G0309200 PROTEIN 6 484 IPR045897 -
Trre5g01272 494 PIRSF Lipid_binding_protein 7 483 IPR030675 GO:0005615|GO:0008289
Trre5g01272 494 SMART bpi1_3 34 259 IPR017942 GO:0008289
Trre5g01272 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 277 479 IPR017943 GO:0008289
Trre5g01272 494 Gene3D - 33 464 - -
Trre5g01272 494 Pfam LBP / BPI / CETP family, C-terminal domain 281 462 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01272 Trre-Chr5 8883419 8887736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01272 K05399 - tpra:123917581 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01272 5 8883419 8887736 Trre5g01272 5 8883419 8887736 ECH
Trre5g01272 5 8883419 8887736 Trre9g05052 9 56257113 56258488 PCT