Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01197 ATGGCTACATTGGAAACAATTTCAGCAGCGTTGAATCTTATCGACACGAAGAAAGAAAATCTCAAAACCGCATTTGAAAATCTCCAATCTCACTCTTCATTCCATCATTCACTTCCTCTTTCATGGATTGAACTCGATTCCCACTTCACCACTCTCCAAAACTCGCTTACTAGCCGCTTTGAAATCCTCCAATCACTCGAACAATCACATTCTCAGTCCCAATCCAAAACCCTAATTTCCAACCCTAAAGACGAGAACTTTTTTGTAAACCCTAATGACCCGTCATCGAGCAGGAACAAATTGAGATTTTTGTGTGAGAAGGTTGATGGTAAAGGGTTGAGGAATTACATTTTGGATAATTTTAAGGATAGAATTAGGATTCAGGAGGAACTTATAGAGGAATTTCGGTATGCTCCGGATGCGGGGGAGATGGTTTTGCAATCATTGGAAGGGTTTTATGTGTTGAATGGTAAATTTAACGATAAGGGATTGAGGAGGATGGGGAGGATTTGCAATACTTTGTTGAAGCTTTTGGGTGTTGCTGGTGTGAATGTGAGTTCTAAGGTTAAGGATAAAGCATTATTGGTGGCTTTGGAATGGAAAGTGAGGATGAGGGATGATTATGGTAACATTGTGGGGGCTTTGGGGTTTTTATATTTGATTTATGGATTTGGTATTGTTTCTGAATTCAGCATGGATGAGCTTGTTGAATATGCTGCCAGGGCTGCCGTTAATGGTGAGTTCATGCAGCTTTGTCGGGATATTGGGATGACAGATAGAGTTCCTGAGATTGTTCAGAAACTTGTTGATAGGGGCAAACATGTTCTGGCTGTCAAGTATGTTTTTGAGTTTAATCTTGCTCATAAGATTCCTCCTGTTCCTATTTTGAAAGCTGGCGTGGAAGAAGCTAAGCAACTTGCTAGAAGACTTTCCGAGGAAGGAAAGCCAAGGATGGAAATTATTAATAGAGAAATTCATACACTGAAATCAATAATTGCGACTATTGTGAATCATAAGCTTGAATCTGAATACCCACGAGCTAGCCTTGACCAGCGTATAGAGCAATTGAAGGGGCAAGATGCAAATATGAAAGACAGAACACCAACTTCTATTCTAAATCAGCATCCAATGCAACAACAACAACGAAAGAGAAGTATGGAGCAGCAGCAGCAAAATGAGACCAAGCTTCCTCGAACATCCTCTTCAGTTGGTCCAGCAGCTGTCCTCAAGAATATAACTGGTGACAATCCAACAATATGCCAGTACCAGCAACCTCCTGTCAATCCCTCAGGTTTGTTTCCAGAACATCCATATCCATACATAGGCTCGCCAGCTATGCTACCTGGCATGATGGGCCCTACCTTAACCAGGCCTTCTTACCCAGGTCCTTCAGCTGGGACTTATGGTTTTGCTGGAATTCCCAATCCCATAAGTCCCAACCTAGGTGGTTCTCGTATGATACACTCAGCAGTGCCACATATGTCATCTGCTTATTATGATAGTAACTCTACTTATGGCGGTATTAATCTGCGACATCATCACCAATAA 1548 0.4167 MATLETISAALNLIDTKKENLKTAFENLQSHSSFHHSLPLSWIELDSHFTTLQNSLTSRFEILQSLEQSHSQSQSKTLISNPKDENFFVNPNDPSSSRNKLRFLCEKVDGKGLRNYILDNFKDRIRIQEELIEEFRYAPDAGEMVLQSLEGFYVLNGKFNDKGLRRMGRICNTLLKLLGVAGVNVSSKVKDKALLVALEWKVRMRDDYGNIVGALGFLYLIYGFGIVSEFSMDELVEYAARAAVNGEFMQLCRDIGMTDRVPEIVQKLVDRGKHVLAVKYVFEFNLAHKIPPVPILKAGVEEAKQLARRLSEEGKPRMEIINREIHTLKSIIATIVNHKLESEYPRASLDQRIEQLKGQDANMKDRTPTSILNQHPMQQQQRKRSMEQQQQNETKLPRTSSSVGPAAVLKNITGDNPTICQYQQPPVNPSGLFPEHPYPYIGSPAMLPGMMGPTLTRPSYPGPSAGTYGFAGIPNPISPNLGGSRMIHSAVPHMSSAYYDSNSTYGGINLRHHHQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01197 515 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 68 391 - -
Trre5g01197 515 MobiDBLite consensus disorder prediction 362 405 - -
Trre5g01197 515 MobiDBLite consensus disorder prediction 73 96 - -
Trre5g01197 515 Coils Coil 346 366 - -
Trre5g01197 515 MobiDBLite consensus disorder prediction 357 405 - -
Trre5g01197 515 Pfam Frigida-like protein 95 365 IPR012474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01197 Trre-Chr5 8483606 8487918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01197 - - mtr:11430895 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01197 5 8483606 8487918 Trre5g01197 5 8483606 8487918 ECH
Trre5g01197 5 8483606 8487918 Trre9g05135 9 56773787 56776704 PCT