Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03749 ATGGTCATGGACAAGGTGACTCAATATGTACGTGTGTTCAATCACTTTGATGAAAATGGAGATGGAAAAATATCACCGTCAGAGCTGCGGCAATGTGTGGAGGCAATCGGGGGCAAGATGTCAAACGAGGAAGCGGAAGTGGCGGTAGAGCTTCTCGACTCGGACGGGGATGGGTTGGTTGGGTTGGATGATTTTGTGAGATTTGTAGAGGGAGGAAAAGAGGAAGAGAAAGTGAATGACTTAAGAGAGGCTTTTAAGATGTATGAAATGGAGGGGTTTGGTTGTATTACACCAAAGAGTTTAAAGAGAATGCTTGGAAGATTGGGTGAATGTAGGAGTGTTGTTGAATGTCAAGCCATGATTGCAAAATTTGACATTGATGGAGATGGGATGCTTAGTTTTGATGAATTTAGGGCAATGATGCTTTAA 429 0.4289 MVMDKVTQYVRVFNHFDENGDGKISPSELRQCVEAIGGKMSNEEAEVAVELLDSDGDGLVGLDDFVRFVEGGKEEEKVNDLREAFKMYEMEGFGCITPKSLKRMLGRLGECRSVVECQAMIAKFDIDGDGMLSFDEFRAMML 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03749 142 FunFam Putative calcium-binding protein CML19 4 71 - -
Trre3g03749 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Trre3g03749 142 FunFam Calmodulin-2 A 72 142 - -
Trre3g03749 142 Gene3D - 72 142 - -
Trre3g03749 142 SUPERFAMILY EF-hand 7 142 IPR011992 -
Trre3g03749 142 SMART efh_1 44 72 IPR002048 GO:0005509
Trre3g03749 142 SMART efh_1 116 142 IPR002048 GO:0005509
Trre3g03749 142 SMART efh_1 80 108 IPR002048 GO:0005509
Trre3g03749 142 SMART efh_1 8 36 IPR002048 GO:0005509
Trre3g03749 142 Pfam EF-hand domain pair 11 69 IPR002048 GO:0005509
Trre3g03749 142 CDD EFh 80 141 IPR002048 GO:0005509
Trre3g03749 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Trre3g03749 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Trre3g03749 142 Pfam EF-hand domain pair 94 141 IPR002048 GO:0005509
Trre3g03749 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 80 141 - -
Trre3g03749 142 Gene3D - 2 71 - -
Trre3g03749 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Trre3g03749 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Trre3g03749 142 CDD EFh 11 69 IPR002048 GO:0005509
Trre3g03749 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03749 Trre-Chr3 48397495 48397923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03749 4 141 EF-hand Containing Proteins AT1G76650 47.101 1.68e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03749 K13448 - cave:132180329 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00684 13 5302925 5303359 Trre3g03749 3 48397495 48397923 PCT