Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00684 ATGGTTGTTATGGACAAGGTAAGCCAATATGAACGTGTGTTCAAACGGTTTGATGAAAATGGAGATGGAAAAATATCGCCGACTGAGCTACGACAATGCGTTGAGGCCATCGGTGATGAGAAGTTATCGGCGAAGGATGCAGAGACGGCGGTGACAATTTTGGATTCGGACGGAGATGGATTGTTGGGGTTTGATGATTTTGTGAAGTTTGTGGATGGAGTGAAAGAGGAAGATAAAGTGAATGACTTGAAAGAGGCTTTTAAGTTGTATGATATGGATGGAAGTGGTTGCATCACACCAAGGAGTCTTAAGAGAATGCTTAGTAGGTTAGGTGATTCAAGAAGTATAGATGAGTGTCAACTTATGATCTCTAAGTTTGATCTTGATGGGGATGGGAAAATCAGTTTTGATGAATTTAAGGTCATGATGTTGTAA 435 0.4069 MVVMDKVSQYERVFKRFDENGDGKISPTELRQCVEAIGDEKLSAKDAETAVTILDSDGDGLLGFDDFVKFVDGVKEEDKVNDLKEAFKLYDMDGSGCITPRSLKRMLSRLGDSRSIDECQLMISKFDLDGDGKISFDEFKVMML 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00684 144 PANTHER CALCIUM BINDING PROTEIN 81 143 - -
Trre13g00684 144 ProSitePatterns EF-hand calcium-binding domain. 18 30 IPR018247 -
Trre13g00684 144 SUPERFAMILY EF-hand 7 144 IPR011992 -
Trre13g00684 144 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Trre13g00684 144 CDD EFh 82 143 IPR002048 GO:0005509
Trre13g00684 144 Gene3D - 77 144 - -
Trre13g00684 144 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Trre13g00684 144 FunFam Calmodulin-2 A 74 144 - -
Trre13g00684 144 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Trre13g00684 144 SMART efh_1 9 37 IPR002048 GO:0005509
Trre13g00684 144 SMART efh_1 82 110 IPR002048 GO:0005509
Trre13g00684 144 SMART efh_1 46 74 IPR002048 GO:0005509
Trre13g00684 144 SMART efh_1 118 144 IPR002048 GO:0005509
Trre13g00684 144 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Trre13g00684 144 Pfam EF-hand domain pair 81 143 IPR002048 GO:0005509
Trre13g00684 144 ProSiteProfiles EF-hand calcium-binding domain profile. 114 144 IPR002048 GO:0005509
Trre13g00684 144 FunFam Putative calcium-binding protein CML19 5 73 - -
Trre13g00684 144 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Trre13g00684 144 Gene3D - 1 76 - -
Trre13g00684 144 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00684 Trre-Chr13 5302925 5303359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00684 5 143 EF-hand Containing Proteins AT1G76650 50.360 1.65e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00684 K13448 - gmx:100783575 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00684 13 5302925 5303359 Trre13g00684 13 5302925 5303359 ECH
Trre13g00684 13 5302925 5303359 Trre3g03749 3 48397495 48397923 PCT