Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03280 ATGGGTTTTCGGATTCAGCTTCTGGGTATGTACTATTTGGCATGGTTTAGCTTTGTTGTTAGTGAAAGTGGATATGATGAAAGTGTAAAGAAAGGAACTGTTATAATTGATGGAAGTTCTGTGATTGGAAATATTGATGATGATTTTGTTTGTGCAACTTTGGATTGGTGGCCTCCTCAAAAATGTGATTATGGAACATGTAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTAAACAACAAGATTTTTTTAAATGCAGTGAAAGCCTTTTCACCGTTGAAACTGAGATTAGGTGGAAGTTTGCAAGATAAGGTGATATATGGGACTGAAGATTATAACCAACCTTGCACTCCTTTTGTACGAAAAGAATCTGAAATTTTTGGATTCACACAAGGGTGCCTCCCAATGCAAAGATGGGATGAACTTAATGATTTCTTCCAAAAAGCAGGGGCAAAAATTGTCTTTGGATTGAATGCTCTTAATGGAAAGTCAATACATGCTGGTGGTTCTGCAAATGGACCTTGGAACTACACGAATGCCGAATCGTTTATTCAATACACTGTTGGAAAGAACTATGACATTCATGGCTGGGAACTTGGAAATGAATTGAGTGGGAATGGTGTTGGAACAAGTGTTTCTGCAGACCAATATGCTTCTGATTTTGCTGCTTTAAGAGACATAGTTGACAATGCATATAGAGACATTGAGCCTAAGCCGTTAGTCATTGCTCCTGGAGGCTTCTTTGATGCAACTTGGTTTAAGGAATTTATAAGCAAATCTGGTAAATCTTTGGATGTCGTCACACACCACATTTATAACCTTGGACCAGGAGTTGATCAGCACCTTGTGGAGAAAATTCTGAATCCTTCATATCTTGATGGAGAGAAAACTACATTCAATGGCCTGAAAAATGTTCTTGAAAGTACAGGAACCTCGGCAACAGCATGGGTTGGTGAGTCAGGAGGGGCTTATAACAGTGGCCATCATCTTGTATCCGATGCATTTGTCTACAGTTTCTGGTATTTGGATCAACTTGGCATGTCTGCTGCTTATGACACGAAAACGTATTGCAGACAGAGTTTGATAGGAGGAAACTATGGTTTACTCAATACTACAAATTTCCTTCCAAATCCAGACTACTATAGTGCTCTTCTCTGGCACCGGCTCATGGGACGACGTGTACTGTCAACTACCTTCTCAGGAACAAACAAGATACGAGCTTACGCGCACTGTGCTAAACAATCCAAAGGAATCACCATACTATTGATCAACCTGGACAAAAACACAAGTATTGAAGCGACATTTAGCAACACTAACAGTTTGCGGTATAGAAAGATGTCCTATAAGTCAAAAATAATGAAACTACCTGTTGATAGTACAAGTGAAACAGCAAGAGAAGAGTACCATCTAACTCCACAAGATGGAAATTTACATAGCCAAATAATGTTACTGAATGGAAATGTTTTAAGCGTAAACTCAGATGGTGATATCCCTCGATTGGAGCCTCTATATGTAAACTCGTCAAAACCAATAAGGGTTGCTCCTTTCTCCATTGTATTTTCTCATATACCTGATGCTGTTGTTCCAGCTTGCAGCTAG 1602 0.3951 MGFRIQLLGMYYLAWFSFVVSESGYDESVKKGTVIIDGSSVIGNIDDDFVCATLDWWPPQKCDYGTCSWGLASLLNLDLNNKIFLNAVKAFSPLKLRLGGSLQDKVIYGTEDYNQPCTPFVRKESEIFGFTQGCLPMQRWDELNDFFQKAGAKIVFGLNALNGKSIHAGGSANGPWNYTNAESFIQYTVGKNYDIHGWELGNELSGNGVGTSVSADQYASDFAALRDIVDNAYRDIEPKPLVIAPGGFFDATWFKEFISKSGKSLDVVTHHIYNLGPGVDQHLVEKILNPSYLDGEKTTFNGLKNVLESTGTSATAWVGESGGAYNSGHHLVSDAFVYSFWYLDQLGMSAAYDTKTYCRQSLIGGNYGLLNTTNFLPNPDYYSALLWHRLMGRRVLSTTFSGTNKIRAYAHCAKQSKGITILLINLDKNTSIEATFSNTNSLRYRKMSYKSKIMKLPVDSTSETAREEYHLTPQDGNLHSQIMLLNGNVLSVNSDGDIPRLEPLYVNSSKPIRVAPFSIVFSHIPDAVVPACS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03280 533 Gene3D Glycosidases 66 389 - -
Trre3g03280 533 FunFam heparanase-like protein 3 69 389 - -
Trre3g03280 533 PANTHER HEPARANASE-RELATED 22 532 - -
Trre3g03280 533 Pfam Glycosyl hydrolase family 79, N-terminal domain 32 347 IPR005199 GO:0016020|GO:0016798
Trre3g03280 533 SUPERFAMILY (Trans)glycosidases 45 391 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03280 Trre-Chr3 40982093 40986660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03280 25 533 Glycoside Hydrolase AT5G61250 49.038 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03280 K07964 - gmx:100791916 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03280 3 40982093 40986660 Trre3g03280 3 40982093 40986660 ECH
Trre15g04598 15 56700031 56702578 Trre3g03280 3 40982093 40986660 PCT