Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04598 ATGGGTTATCAAAAAACACTTCTGGGTATGGTTTTTTGGATTTACTTAGTAAGCTTAAGCTTCATTGGAGTGAATGGAATAGGAGTAGTTGGTGGTGGTGGTGGTGGTTCAGCTGAGAAAGGGGTTGTTGTCATTCATGGAAAATGTCCTATTGGAAGGATTCATAATGATTTTGTTTGTGCAACTCTTGATTGGTGGCCACCTCAGAAATGTGACTGGGGAAAATGCAGTTGGGGTCATGCTTCTTTGCTTAATCTGGACCTCAACAATAAAATTTTGTTAAATGCAGTAAAAGCTTTTTCACCCTTGAAAATTAGATTGGGTGGTACTTTGCAAGATATTGTCACATATGGAACTAAAGATAATAAGGAACCTTGTACTTCATTTGTTTCAAAACCTGGTATATTGTTTGATTTCACTCAAGGGTGCTTACCAATGCAAAGATGGGATGAACTAAACAGCTTTTTCCAAAAAGCAGGGGTTAATGTTATATTTGGATTAAATGCTCTTGCCGGAAGATCTGTGCATGGTGGTGTTGCTGTTGGTCCTTGGAACCCTACCAATGCCGAGTCTTTTATACGTTATACTGTTAGCAAGAAGTACAATATTCATGGTTGGGAATTCGGTAATGAATTGTGTGGAGCTGGAATTGGAACAAGTGTTGCTGCAGGTCAATATGCTTCTGATGTAGTTGTTTTAAGAAAGATAGTTCAAGATGTATATAGAGGGGTTGAGCCAAAACCACTAATCATTGCACCTGGAGGCTTTTTCGATGGCGCTGCTAATTGGTTTAAGGAATTCTTAAACAAATCGGACGAATCTGCAAATGCGGTCACCCACCACATTTATAACCTTGGACCAGGAAGTGATGATCACTTGGTCGAAAGAATTCTTGACCCAACCTATCTTGATGGGGCGGCCAACACTTTCGGCGGTCTTAAAAATGTACTTCAAAGTTCAGGAACTTTAGCTGAAGCATGGGTCGGTGAAGCAGGAGGGGCTTATAGTAGTGGCTGTCATCTTGTGTCTGATGCATTTGTCAACAGCTTCTGGTATTTGGATCAGCTTGGTATGTCAGCGACTTATGGCACCAAGACATATTGCAGACAGACTTTAATAGGAGGAAACTATGGTTTATTGAATACTACGACTTTCAATCCAAATCCAGACTATTATAGTGCTCTTCTTTGGCACCGACTCATGGGAGGACGTGTCCTGTCAACTACCTTCTATGGAACAAAGAAGATCAGAACTTATGCACATTGCACAAAGGAATCTAAGGGAGTCACAATCCTGTTTCTCAACTTGGACAACAGCTCCACCGTTAATGCGCAGGTGGCCTTAAAGTTTGCTGAGAAACCGTACTCTCATTTGAGAGGATCACAGAGAAGAGAGTACCATTTAACAGCAAAAGATGGAAATTTACATAGCCAAATTATGTTACTAAATGGAAACATTCTAAGTGTAAACTCAGATGGTGATATTCCTTCATTGAACCCTATATATGTTGATTCTTCAAAGCCAATAACAGTTGGTCCTCTCTCTATTGTATTTGCTCATATACCAGATGCTGCTGTTAAGGCTTGCAGCTAG 1593 0.4036 MGYQKTLLGMVFWIYLVSLSFIGVNGIGVVGGGGGGSAEKGVVVIHGKCPIGRIHNDFVCATLDWWPPQKCDWGKCSWGHASLLNLDLNNKILLNAVKAFSPLKIRLGGTLQDIVTYGTKDNKEPCTSFVSKPGILFDFTQGCLPMQRWDELNSFFQKAGVNVIFGLNALAGRSVHGGVAVGPWNPTNAESFIRYTVSKKYNIHGWEFGNELCGAGIGTSVAAGQYASDVVVLRKIVQDVYRGVEPKPLIIAPGGFFDGAANWFKEFLNKSDESANAVTHHIYNLGPGSDDHLVERILDPTYLDGAANTFGGLKNVLQSSGTLAEAWVGEAGGAYSSGCHLVSDAFVNSFWYLDQLGMSATYGTKTYCRQTLIGGNYGLLNTTTFNPNPDYYSALLWHRLMGGRVLSTTFYGTKKIRTYAHCTKESKGVTILFLNLDNSSTVNAQVALKFAEKPYSHLRGSQRREYHLTAKDGNLHSQIMLLNGNILSVNSDGDIPSLNPIYVDSSKPITVGPLSIVFAHIPDAAVKACS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04598 530 Pfam Glycosyl hydrolase family 79, N-terminal domain 41 357 IPR005199 GO:0016020|GO:0016798
Trre15g04598 530 FunFam heparanase-like protein 3 78 399 - -
Trre15g04598 530 PANTHER HEPARANASE-RELATED 40 529 - -
Trre15g04598 530 SUPERFAMILY (Trans)glycosidases 54 401 IPR017853 -
Trre15g04598 530 Gene3D Glycosidases 76 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04598 Trre-Chr15 56700031 56702578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04598 35 530 Glycoside Hydrolase AT5G61250 47.409 4.99e-171 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04598 K07964 - gmx:100778008 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04598 15 56700031 56702578 Trre15g04598 15 56700031 56702578 ECH
Trre15g04598 15 56700031 56702578 Trre3g03280 3 40982093 40986660 PCT