Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02785 ATGCGTTTCGATGGAACTGTTGCAGTAGCTTCTGCTTTTGCTGGCCATAAGAAAGCTATAAAGGAGAGAGACCACAAATTTTTAAGAAAAGCAGTTGAAGAAGCATATAAAGGTGTAGATTGTGAAGATGGAGGTCCTTTTGGTGCTGTTATTGTTTATAATGATGAAATTGTTGCTAGTTGCCACAACATGGTTCTTAGGAACAAGGACCCTACTGCTCATGCTGAAGTTACAGCAATAAGAGAGGCTTGTAAGAAACTAAAGCAAATAGAACTTTCAGATTGTGAAATATATGCTTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCTATCCACCTTTCACGAGTTAAGAGGTTGGTTTATGGAGCTAAAGCTGAGGCTGCAATTGCGATTGGTTTTGATGATTTTATAGCTGATGCATTGCGAGGTACTGGAGTTTATCAGAAAGCACAGTTGGAAATTAAAAGAGCTGATGGTAATGAAGCCATCATTGCTGAAGAAGTGTTTGAGAAAACAAAGGAAAAATTTCGAATGTATTAA 540 0.3852 MRFDGTVAVASAFAGHKKAIKERDHKFLRKAVEEAYKGVDCEDGGPFGAVIVYNDEIVASCHNMVLRNKDPTAHAEVTAIREACKKLKQIELSDCEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFIADALRGTGVYQKAQLEIKRADGNEAIIAEEVFEKTKEKFRMY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02785 179 SUPERFAMILY Cytidine deaminase-like 19 137 IPR016193 GO:0003824
Trre3g02785 179 CDD nucleoside_deaminase 28 135 - -
Trre3g02785 179 Gene3D Cytidine Deaminase, domain 2 15 178 - -
Trre3g02785 179 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 17 126 - -
Trre3g02785 179 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 22 122 IPR002125 -
Trre3g02785 179 FunFam tRNA-specific adenosine deaminase 22 178 - -
Trre3g02785 179 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 22 136 IPR002125 -
Trre3g02785 179 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 74 111 IPR016192 GO:0008270|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02785 Trre-Chr3 30029608 30034016 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02785 - - gmx:100500436 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05041 15 60224813 60228087 Trre3g02785 3 30029608 30034016 PCT