Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05041 ATGGAAGAAGTTAAAGTTGTAGAAACTAAGGATGGAACTGTTTCAGTAGCTGCTGCATTTGCTGGTCACCAGGAAGCTGTGCAAGATAGAGACCACAAATTTTTAAGAAGAGCAGTCGAAGAAGCATATAAAGGAGTAGATTGTGGAGACGGAGGCCCTTTTGGTGCTGTTATTGTTCACAAGGATGAAGTAGTTGCTAGTTGTCACAACATGGTTCTGAATTACACTGATCCAACTGCTCATGCAGAGGTCACAGCCATAAGAGAGGCTTGTAAGAAGCTGAAGCAGATAGAACTTTCAGATTGTGAAATATATGCTTCTTGTGAACCCTGCCCCATGTGCTTTGGGGCAATCCACCTTTCCCGAATTAAGAGATTGGTTTATGGAGCCAAGGCAGAGGCAGCAATTGCTATTGGCTTTGATGATTTTATTGCAGATGCGTTGAGAGGTACTGGATTTTACCAGAAAGCATCGTTGGAAATTAAAAGAGCTGACGGTAATGAGGCCATCATTGCAGAAGAGGTTTTTGAGAAAACAAAAGCCAAATTTCAAATGTATTAA 561 0.4153 MEEVKVVETKDGTVSVAAAFAGHQEAVQDRDHKFLRRAVEEAYKGVDCGDGGPFGAVIVHKDEVVASCHNMVLNYTDPTAHAEVTAIREACKKLKQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKASLEIKRADGNEAIIAEEVFEKTKAKFQMY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05041 186 SUPERFAMILY Cytidine deaminase-like 24 144 IPR016193 GO:0003824
Trre15g05041 186 Gene3D Cytidine Deaminase, domain 2 30 185 - -
Trre15g05041 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
Trre15g05041 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 23 133 - -
Trre15g05041 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 143 IPR002125 -
Trre15g05041 186 CDD nucleoside_deaminase 35 142 - -
Trre15g05041 186 FunFam tRNA-specific adenosine deaminase 29 185 - -
Trre15g05041 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05041 Trre-Chr15 60224813 60228087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05041 - - cam:101506670 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05041 15 60224813 60228087 Trre3g02785 3 30029608 30034016 PCT