Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02624 ATGGTTTTATTTTCTTCTCATAAGAGTACAAGTTTCTTCTTTGTGTTTCTATGTGTTGCAGCACTTGGTTCGGTTTTTTTGGTGTGGCAGAGGAATGTGATTAATTCTTTCTTTGTTTTGGGTGGGGTGGAGGTTCCGGTTTGGGAATCACCAAAGCTGAGACCTGTGGTTTTCAATTTGGTTGATTTTGGTGGTGTTGGTGATGGTGTTGCTCTTAATACTATGGCTTTTGAAAGAGCTGTTTCTGTTATTTCTAAGTTTGGAGATAAGGCTCATGATGCTGTCATTCTTGGAATTCAGGATGAAAATTATTGGCCATTGATGCCTGCATTGCCTTCATATGGGCATGGTAGGGAACATCCTGGACCACGGTATGGCAGTTTAATTCATGGTCAAAATCTTAAAGATGTTGTAATAACAGGACATAATGGAACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCTCCATAAGCTTCTCAACCACACAAGGGGGCCACTTGTCCAGCTCATGTATTCTAGTGACATTGTGATCTCAAATATTACTCTGCGCGACTCTCCTTTTTGGACTCTTCATCCATATGACTGCAAGAACGTTACAATAAAAAATGTTACGATATTGGCACCTGTATATCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGATTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGATGGGATCAATATGGAATTTCTTATGGAAAGCCTTCGAAGAATATCCTAATCCGAAACCTTGTCGTTCGTTCTAATGTCAGTGCTGGTATCTCAATAGGAAGTGAAATGTCCGGTGGAGTATCCAATGTCACCATCGAGAACATTCTTGTATGGGAATCTAGACGTGCCATGAGGATCAAAACCGCACCAGGTAGAGGAGGATACATTCGTCAAATAACTTACCGGAATCTAACTTTCCACAATGTCCGTGTTGGAATTGTTATCAAAACCGATTACAACGAACATCCTGACTCTGGTTATGACCCTTCAGCTCTTCCAATTCTCAGAGACATAAGTTTCACCAATATCCGCGGTGAGGGAGTTCGCGTACCGTGTGCCTTTGTGGAAGGTCGAGTAATAGGGACCATTTTTCCGAAACCGTGTCTGAATTTTGATCAGTACAATGAGCAAGGAGAGTTGGTTAAGCATGCTGTGTCACAAAATATAACAAATATAGATTATGAAATTTGA 1254 0.4059 MVLFSSHKSTSFFFVFLCVAALGSVFLVWQRNVINSFFVLGGVEVPVWESPKLRPVVFNLVDFGGVGDGVALNTMAFERAVSVISKFGDKAHDAVILGIQDENYWPLMPALPSYGHGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQTWWTKYLHKLLNHTRGPLVQLMYSSDIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGISYGKPSKNILIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWESRRAMRIKTAPGRGGYIRQITYRNLTFHNVRVGIVIKTDYNEHPDSGYDPSALPILRDISFTNIRGEGVRVPCAFVEGRVIGTIFPKPCLNFDQYNEQGELVKHAVSQNITNIDYEI 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02624 417 SUPERFAMILY Pectin lyase-like 48 390 IPR011050 -
Trre3g02624 417 Gene3D - 45 412 IPR012334 -
Trre3g02624 417 Pfam Glycosyl hydrolases family 28 126 367 IPR000743 GO:0004650|GO:0005975
Trre3g02624 417 PANTHER PECTIN LYASE-RELATED 92 373 - -
Trre3g02624 417 SMART pbh1 198 225 IPR006626 -
Trre3g02624 417 SMART pbh1 288 309 IPR006626 -
Trre3g02624 417 SMART pbh1 260 282 IPR006626 -
Trre3g02624 417 SMART pbh1 226 247 IPR006626 -
Trre3g02624 417 SMART pbh1 317 338 IPR006626 -
Trre3g02624 417 SMART pbh1 351 373 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02624 Trre-Chr3 26780713 26786957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02624 3 417 Glycoside Hydrolase AT1G19170 61.934 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02624 - - gmx:100791187 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02624 3 26780713 26786957 Trre3g02624 3 26780713 26786957 ECH
Trre15g05112 15 60819558 60823619 Trre3g02624 3 26780713 26786957 PCT