Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05112 ATGGTGGAAACCTCAACATTAGGTCGCTTCCAATACCAAAGACTCGACTCTAAACGCTGCGTTCCGGCATTCATAACCTCACACAAGTCCCTCCTTTTGGTTCTATGGATCGCCGGTTTTTTATCGGTTTTTATTTGGCAGAGAAACATTGTGGTTGGTGGGTTTTTGTTTTTCGGACGGGTTCCGGTTAGACCGATTCCGAAGATGAGACCCGTGGCTTTCAATTTGACCGATTTTGGTGGTGTTGGTGATGGGGTTACTCTTAATACTGAAGCTTTTGAGAGAGCTATTTCTGCTATATCTAAATTCGGGAAGAAAGGTGGGGCCCAGCTCAATGTTCCTCCTGGTCTTTGGCTCACTGCACCTTTCAATCTTACAAGCCATATGACTCTCTTTCTAGCTGAAGATTCTGTTATTCTTGGCATTGATGATGAGAAGTATTGGCCACTCATGCCTCCGTTGCCTTCATATGGGTATGGAAGGGAGCGTCCTGGGCCTCGATATGGAAGTTTGATTCATGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCATAATGGCACCATAAATGGCCAAGGACAAGCATGGTGGAAAAAATTTCGCCAAAAGCGTCTCAACTACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTAATCACTAATATTACTCTACGCGACTCTCCTTTTTGGACGTTCCACCCATATGACTGCAAAAACATTACAGTAAAAGGTGTTACAATTTTGGCTCCTGTATTTGAAGCTCCAAACACTGACGGCATAGATCCTGACTCTTGCGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGTGATGATGCAATTGCAATAAAAAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGTATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACATCACAGTGGAGAATGTTCTTATATGGGATTCTAGGCGTGGTGTGAGGATAAAGACTGCACCTGGGCGAGGAGGATCTGTGCGACAAATAACTTATCGGAATATAACATTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACGCTGATGACGGTTACGACCCTACAGCACTTCCAGATATAAAAGACATTAGCTTCACCGGTATCTATGGCCATGGAGTTCGTGTGCCAGTACGTATTCACGGTAGCGAAGAGATTCCTGTGAGAAATGTAACTTTTCGTAAAATGTCAGTTGGATTAACCTACAAGAGGAAGCACATATTTCAGTGTGCATTTGTACACGGCCAGGTAATAGGGACCATTTTCCCGTCTCCATGCGAGAACCTTGATCTGTACAATGAGCAAGGACAGCTTGTTAAACAATCCATGTCCCAGAATGTAACAGATATAGATTATGATTTTTAA 1479 0.4341 MVETSTLGRFQYQRLDSKRCVPAFITSHKSLLLVLWIAGFLSVFIWQRNIVVGGFLFFGRVPVRPIPKMRPVAFNLTDFGGVGDGVTLNTEAFERAISAISKFGKKGGAQLNVPPGLWLTAPFNLTSHMTLFLAEDSVILGIDDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKFRQKRLNYTRGPLVQIMWSSDIVITNITLRDSPFWTFHPYDCKNITVKGVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNITVENVLIWDSRRGVRIKTAPGRGGSVRQITYRNITFENVRVGIVMKTDYNEHADDGYDPTALPDIKDISFTGIYGHGVRVPVRIHGSEEIPVRNVTFRKMSVGLTYKRKHIFQCAFVHGQVIGTIFPSPCENLDLYNEQGQLVKQSMSQNVTDIDYDF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05112 492 SMART pbh1 331 352 IPR006626 -
Trre15g05112 492 SMART pbh1 241 268 IPR006626 -
Trre15g05112 492 SMART pbh1 360 381 IPR006626 -
Trre15g05112 492 SMART pbh1 303 325 IPR006626 -
Trre15g05112 492 SMART pbh1 421 442 IPR006626 -
Trre15g05112 492 SMART pbh1 269 290 IPR006626 -
Trre15g05112 492 SMART pbh1 394 416 IPR006626 -
Trre15g05112 492 Pfam Glycosyl hydrolases family 28 170 452 IPR000743 GO:0004650|GO:0005975
Trre15g05112 492 Gene3D - 63 453 IPR012334 -
Trre15g05112 492 SUPERFAMILY Pectin lyase-like 65 465 IPR011050 -
Trre15g05112 492 PANTHER PECTIN LYASE-RELATED 67 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05112 Trre-Chr15 60819558 60823619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05112 1 491 Glycoside Hydrolase AT1G19170 73.267 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05112 - - gmx:100818529 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05112 15 60819558 60823619 Trre15g05112 15 60819558 60823619 ECH
Trre15g05112 15 60819558 60823619 Trre3g02624 3 26780713 26786957 PCT