Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02488 ATGCTTAGTCTAAGAACTTGCCCATCACTTTCCCTCTCATTCACACCATGCAAACAAGTGAAAAAACTCAACTCATCATTCAAACCCTACAAGCAATCTCCACCGTCCAAATTCCTATCTTCAATCAAGATGTCATCCACTTCAACATCCCAAGGAGTAGAGCATATTGTACTCTTGAAAGTCAAAGACAACATAGAATCATCAAAAATCAACACCATGATCAATGAAGTTCAATCATTGGTTACAATTGAACAAGTTCGCCACTTCACTGTGGGTCCACTTCTAACCAACAACAAAACCACCTCAACAACCATACCATTTTCGGATCTTAGTTACACTCACTTAGTACATAGTCGTTATGAGTCAAAGGAAGACCTTCAAATTTACATTGATCACCCTAACCACCTAAACGTCGTAAAAGACTTCATTTTTCCTATTTGTGACGACCTTCTGGTCGTCGATTGGGTAGGCGAAGACGTTGCTCTGCTGCCTCACCCTTCGCCTGGTACTGCTTTTCGTGTGAGTTTATTGAAACTCAAGGATGAAAAAGACACTAAAGTTAAGGAGGAGGTTTTTCGGGCTCTTCGAGAATTTGAGGAGAGTGTTGGAGTTAGTTATATATCTTACGGAGACAATATCTCGCCAAAGATGGCGAAGGGCTTCTCCATTGCTTCGCTGCTTGTTTTTTCGGAACGGGAGGGGTTGGACCGTGTGGAGCCCGAGGAGGGTTTGGTTAATGTTAACGAGTATTTGGAAAGTGTGGTGGTGGTTGATTTTGTGGTTCCTAAGTAA 792 0.4217 MLSLRTCPSLSLSFTPCKQVKKLNSSFKPYKQSPPSKFLSSIKMSSTSTSQGVEHIVLLKVKDNIESSKINTMINEVQSLVTIEQVRHFTVGPLLTNNKTTSTTIPFSDLSYTHLVHSRYESKEDLQIYIDHPNHLNVVKDFIFPICDDLLVVDWVGEDVALLPHPSPGTAFRVSLLKLKDEKDTKVKEEVFRALREFEESVGVSYISYGDNISPKMAKGFSIASLLVFSEREGLDRVEPEEGLVNVNEYLESVVVVDFVVPK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02488 263 ProSiteProfiles Stress-response A/B barrel domain profile. 53 155 IPR013097 -
Trre3g02488 263 ProSiteProfiles Stress-response A/B barrel domain profile. 171 263 IPR013097 -
Trre3g02488 263 SMART Dabb_2 171 261 IPR013097 -
Trre3g02488 263 SMART Dabb_2 53 157 IPR013097 -
Trre3g02488 263 SUPERFAMILY Dimeric alpha+beta barrel 171 261 IPR011008 -
Trre3g02488 263 Gene3D - 49 157 - -
Trre3g02488 263 PANTHER - 50 261 IPR044662 -
Trre3g02488 263 Gene3D - 168 261 - -
Trre3g02488 263 SUPERFAMILY Dimeric alpha+beta barrel 51 157 IPR011008 -
Trre3g02488 263 Pfam Stress responsive A/B Barrel Domain 173 261 IPR013097 -
Trre3g02488 263 Pfam Stress responsive A/B Barrel Domain 53 155 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02488 Trre-Chr3 24246243 24247034 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02488 - - mtr:25480363 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02488 3 24246243 24247034 Trre3g02488 3 24246243 24247034 ECH
Trre15g05145 15 61096380 61097009 Trre3g02488 3 24246243 24247034 PCT