Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02448 ATGATATTGTCTAGAATGGAAAGTGGGAAGAAGAATAGTGGGGTTTCTGGTAATCAAAAGAAATTGTTAAAGGATGTTGAAACTATGAATAAAGCTATGTACTTGGATAGAAATGTTTCAAGGAATTCAGTTTCGGGTTCGGGTTCGAATTCGAGGTCTAAAATCGCTGGAAAACCGTTATTTCTTGATCCGAAACCGAGGGGTAAAGGAAGTAATAGTAATGATGATAATGATGGTTTGCAGAAGGATAAAAGGTCTATATGGAATTGGAGACCATTGAAGGCACTTTCGCATATCCGAAATAAACGGTTTAATTGTAGTTTTTATCTTCATGTACATTTGATTGAAGGGTTGCCTTCTACTTTTAATGGTTCGAGTTTTTCGGTGTATTGGAAGAGGAGGGACGGGGTTTTGGTGACTCGTCCGGTAAAGGTTGTTCAGTGTGTGGCTGAATTTGATGAGAAGTTGACTTATACTTGCTCGGTTTATGGAAGTAGGAGTGGACCTCACCATTCTGCGAAGTATGAAGCAAAGCACTTTTTGCTTTATGCTTCTCTTCTGAGTGCGCCAGAGCTTGATTTGGGTAAGCACCGAGTTGATCTCACGAGGTTGCTTCCTCTCACTTTGGAGGAGCTCGAGGAGGAAAAAAGCTCGGGGAAGTGGACTACTAGTTTCAGGTTATCAGGTAAGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGGTATACTGTTGTTGGTGATAACACCAGCGCGGTCAGAGATGGCCATAATGGTCCTAATGTAATGACTTCGAGGCAGAATAGTCTAGCTTTGATGAAACCAGACGCTAAACAGAAACAGTTTGATGGAAGCAGTAGCATGAGGCGTGGCGGAAGTTTACAAAACTTTAGTAGTCGGTACTCGTCTCAAACCGCAGAAGAGGTAAAGGATCTTCATGAGGTGTTGCCATCGTCTAAATCTGCGCTAGCCAACTCAATAGGTGTCTTATATAAGAAATTCGATGAAGAAAAGACATGTAGCTCTCTGGACAATGAACTTGATCCTGATTTGTCAAAAGAAAATCTCGAGCCAATCAAACCAGATGCATGTGCTTCGCCTGATATCGAAAAAGAAACGCCTGAAGTGCATGCAGGTTACGATGAAAATCCATGTCCAGTGCTTGGCACACCTGAACTCAATGCATTTCAAGAAAACCTGGAGACAGATGAAACAGATGGCCATCTTTTACTTGATTCTGGAAAAGAAAACATCGAAGACTGTCAAGATAACAATGAATTTTTTGTCGTTGATAAGGGTATTGAAATCTCACCAATTGAACCTGTTAAAGAAGAGGAGTTGCCCACAAAGGCTTCTGAAGATGCTTCTACAGTTGATACTACTTTTATCCTTGATCCTGCAGGCCTACAAGGATCTTCTGAAGATAGTTTTAAACATGATGATTCTCTTGATGAGGCAAATGATGGTTGTAAGGATCATGCCGTGGTAGACGAATCTGCTTGGGAAGAGGATGACTTTTTGACAAATGAACTGCTGCAAGAATTAGAATCAGCTATAAATAGTGTCTCCGATTTGGAGACAGCAGCTCTAGAGTCTCCAAAAGTTGCAGAATTTAAATCTGAATATAATATGAGAAAGACACATAGCTTAGACGATGTTACAGAATCGGTTGCGAATGAATTTTTAAACATGCTAGAAATAGACCATAGTCTCAAAGGTTTGAATTCCGAAAGCGAGCCTGAGTCTCCAAGAGAGCTTCTTTTAAGAGAATTTGAGAAGGAAGCTCTTGATGGGGGCTTCTCTTTATTTGATTTTGATATGGACTGTGACGATGAAGAAGATGATGGCTACGGTGCGTCTAATGGATCTGAGCAGTGGAACTTCTCCGAGGCTACTCATTCATCATCCTTGTTCCAACATCTGCAGAAGGAACATCTAGTTGAGTCTCACGACGTGAAGGGCAAACAAAAGGCTCAAGCGCTAGAAGACATGGAAACAGAAGCCTTAATGCGTCAATGGGGATTGAACGAGAAGGCTTTTCACCATTCTCCACCGAAAGATTATACCGGTTTCGGAAGTCCAATTCAATTACCACCTGACGAGCCTCTGACATTGCCTCCTCTTGCCGAGGGGTTAGGCCCTTTTCTTCAGACAAAAGATGGGGGTTATCTACGGTCTATGAATCCTGCAATTTTCAGGAACACTAAAGCTGGTGGGAGTTTAATCATGCAAGTTTCCAACCCTGTCGTTGTACCTGCAGAAATGGGTTCCGGGATAATGGAAGTTTTACAGTGTTTGGCTTCGGTGGGAATTGAAAAACTTTCAATGCAAGCAAAAGAGTTGATGCCACTGGAAGATATCACTGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCTGCCTTAGAAGGAACGGAGAGGCAATTCCATTTGCAGAATGATTCAGTAACAGGTCAAGATACTTCTTTTGTGCAAAGGAACTTAATAGGAACACCGCCGTCTGGACGGAAGTCCGGCAATTTTAATTCAAGTTCGCTGGCCAACCAAACAGGTTCAGAGTTTGTTTCAATTGAAGATCTTGCCCCATTAGCTATGAACAAAATTGAAGCACTTTCAATGGAGGGATTGAGAATACAATCTGGGCTGTCGGATGAGGATGCGCCATCTAACATTGTTGCACAATCCATTGGGGAAATGTCAGCTCTCCAAGGCAAGGGCATTGATATTAACGGATCTCTCGGCATGGACGGAGCTGCCGGTTTGCAGTTGATGGATGTAAAAAACACCAGTGATGATGCTGTTGACGGGATAATGAGCCTATCATTAACTCTTGACGAGTGGATGAAGCTTGATTCGGGTGACATTGGTGATGTAGATAATATCAGCGAGCATACTTCCAAAGTTCTTGCAGCCCATCATGCTAACTCTTTCGACTTTATCCGTGGGAGTTCAAAAGGAGGAGATAGGAGACGAGGAAAAGGCTCCGGCAGAAAATGTGGTTTGCTAGGAAACAATTTCACAGTAGCGTTAATGGTGCAGCTTCGCGATCCTCTGAGAAATTATGAACCTGTTGGAACACCGATGCTTGCTCTTATACAAGTTGAGAGAGAGTTCGTCTTACCAAAGCAAAAAATATTTTGTAGTGTGTCCGAGTTACGGAACAACAACAATGACGAGGACGATGAGAGCGAAATAGTAGCAAAGGTGGAGACGAAGGACACCGATAAAGAGGAGATAATTCCTGAAGCAGAACTCATTCCTCAGTTCAAGATTACCGAAGTACATGTAGCAGGTCTTAAAACTGAGCCTCAGAAAAAGAAGCTTTGGGGCACCTCGACGCAGCAACAATCTGGTTCGCGCTGGTTGCTTGCTAATGGTATGGGGAAGAGCAATAAGTTTCCATCAATGAAGTCGAAAGCTGCATCTAAATCTATTGCTCCGGTTACCACAAAGGTGCAGCCTGGTGATACCTTGTGGAGCATTTCTTCGCGTATTTTTGGTTCTGGAAAAAAATGGAAGGATTTGGCAGCGCTAAATCCACATATAAGAAACCCTAATGTCATTATACCAAATGACACTATTAGACTTAGTTGA 3594 0.4257 MILSRMESGKKNSGVSGNQKKLLKDVETMNKAMYLDRNVSRNSVSGSGSNSRSKIAGKPLFLDPKPRGKGSNSNDDNDGLQKDKRSIWNWRPLKALSHIRNKRFNCSFYLHVHLIEGLPSTFNGSSFSVYWKRRDGVLVTRPVKVVQCVAEFDEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGKAKGAVMNVSFGYTVVGDNTSAVRDGHNGPNVMTSRQNSLALMKPDAKQKQFDGSSSMRRGGSLQNFSSRYSSQTAEEVKDLHEVLPSSKSALANSIGVLYKKFDEEKTCSSLDNELDPDLSKENLEPIKPDACASPDIEKETPEVHAGYDENPCPVLGTPELNAFQENLETDETDGHLLLDSGKENIEDCQDNNEFFVVDKGIEISPIEPVKEEELPTKASEDASTVDTTFILDPAGLQGSSEDSFKHDDSLDEANDGCKDHAVVDESAWEEDDFLTNELLQELESAINSVSDLETAALESPKVAEFKSEYNMRKTHSLDDVTESVANEFLNMLEIDHSLKGLNSESEPESPRELLLREFEKEALDGGFSLFDFDMDCDDEEDDGYGASNGSEQWNFSEATHSSSLFQHLQKEHLVESHDVKGKQKAQALEDMETEALMRQWGLNEKAFHHSPPKDYTGFGSPIQLPPDEPLTLPPLAEGLGPFLQTKDGGYLRSMNPAIFRNTKAGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPALEGTERQFHLQNDSVTGQDTSFVQRNLIGTPPSGRKSGNFNSSSLANQTGSEFVSIEDLAPLAMNKIEALSMEGLRIQSGLSDEDAPSNIVAQSIGEMSALQGKGIDINGSLGMDGAAGLQLMDVKNTSDDAVDGIMSLSLTLDEWMKLDSGDIGDVDNISEHTSKVLAAHHANSFDFIRGSSKGGDRRRGKGSGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVLPKQKIFCSVSELRNNNNDEDDESEIVAKVETKDTDKEEIIPEAELIPQFKITEVHVAGLKTEPQKKKLWGTSTQQQSGSRWLLANGMGKSNKFPSMKSKAASKSIAPVTTKVQPGDTLWSISSRIFGSGKKWKDLAALNPHIRNPNVIIPNDTIRLS 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02448 1197 SUPERFAMILY LysM domain 1148 1196 IPR036779 -
Trre3g02448 1197 Coils Coil 507 527 - -
Trre3g02448 1197 MobiDBLite consensus disorder prediction 341 366 - -
Trre3g02448 1197 MobiDBLite consensus disorder prediction 341 356 - -
Trre3g02448 1197 MobiDBLite consensus disorder prediction 1 22 - -
Trre3g02448 1197 Gene3D LysM domain 1140 1197 IPR036779 -
Trre3g02448 1197 Pfam LysM domain 1151 1196 IPR018392 -
Trre3g02448 1197 ProSiteProfiles LysM domain profile. 1148 1196 IPR018392 -
Trre3g02448 1197 ProSiteProfiles C2 NT-type domain profile. 96 244 IPR019448 -
Trre3g02448 1197 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 3 1191 IPR039614 -
Trre3g02448 1197 SMART LysM_2 1149 1197 IPR018392 -
Trre3g02448 1197 CDD LysM 1151 1196 IPR018392 -
Trre3g02448 1197 MobiDBLite consensus disorder prediction 270 300 - -
Trre3g02448 1197 MobiDBLite consensus disorder prediction 465 484 - -
Trre3g02448 1197 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 101 246 IPR019448 -
Trre3g02448 1197 MobiDBLite consensus disorder prediction 37 54 - -
Trre3g02448 1197 MobiDBLite consensus disorder prediction 37 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02448 Trre-Chr3 23500564 23504532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02448 - - mtr:25486459 1883.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02448 3 23500564 23504532 Trre3g02448 3 23500564 23504532 ECH
Trre15g05152 15 61142868 61146106 Trre3g02448 3 23500564 23504532 PCT