Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05152 ATGTTGCCGAAAAGTGAAGGTGGTGAAGAATTGTTAAAAAAAGATGTTGAAACTATAACAAAAACTCTCTACACAGAAAAAACCCTTTCTAAGAACTCATCAGCATCAAAACACAATGATCCAAAACCAAAACCTGATAAAGAAGATAATAATAATTTCAAAAAGGATAAGAAATCCATATGGAATTGGAAGCTATTAAGAGCACTTTCTCTTACTAGGAGTAAGAAATTTAATTGTTGTTTTTCTCTTCAAGTTCATTTCATTGAAGGATTACCTTTAAGTTTCAATGATAAATCCCTTTGTGTTCATTGGAAGAGACGCGATCAACATTTCGTTACTCCTCCGACGAAAGTAGTTCGAGGTGTTGCTAAGTTTCAAGATATTTTGAGCTGTACTTGTTCAATTGTTGGAAGTAAAAGGGGATCATATAATTCTGCTAAGTATGAGGCTAAGCATTTTATGCTCTATGCTTCTGTGCTCGGTGTTCCTGAACTTGATTTAGGGAATCATCGTTTAGATATAACACGATTGCTTCCACTTTCGTTGGAAGATCTTGAAGAGGAGAAGAATTCGGGGAAATGGAGTACAAGTTATAGATTATCAGGAAAGGCTAAAGGTGCTGTAATGAATGTGAGTTTTGGGTATATGGTGGTTTGTGATAACAATACTTTTGCTCCTAATGTATTATCTTCGAGGCAAAATTGTATGGCTTTGAGTAAAACAGATGTGAATCCGTGTCAGTATTCGTCTCGGGTTATAGATGAGGTGAAGGATCTTCATGAAGTATTGACATCAACAAATTCAGCAAAAGTTGGTTCAACAGATGTCGTCTTGTCTAAGAAATTTGATGATGAAAACACATGTAGTCCCCTGCACGAGAAACCTGAACTTGTACCAAAAGAGAATCTTGAGCCGATCAAATTAGACGTGTTTCAAGAAAACTTGGAGACAGGTGAGACGGTTGAGCCACGTGATTATTTTACACCCGAGTCTGTAAAAGAGAGTTATGATGAATGTGATAGATTTTCTGTTGTTGATCAAGGCGTTGAGTTTTCATCAAACGAACATATTAAACTCAAGGAATCCATTGTAGAACCTATTGTTGGTAGTTCTAAGGAAAGCACTGTGGTACATGAATTTTCTAACAAAAAGGATGAGTTATACACAAAAGAACTTCTCCTACAAGAAATAGAATCAGCTTTAAATTGTATCTCGGAGTTAGAGACAGTGGCATCAGAATCTCCTAAAATTATGGAAGTCACATCTGAAAGTAAGTTCAGAAAGTCACACAGCTTGGAATCCTTGGATGACGTTACCGAATCAGTTGCTGGTGAGTTTTTGAGTATGCTAGGCCTAGACAATAGTCCAACAGGCTTTAGTTTTGAAAGTGAGCCTGAGTCTCCGAGAGAGCGCCTTTTAAGACAGTTTGAGAAGGACATTGGCTCTGATGGCTTCTCTTTTTTTGATGATTATGATGGCGATGGCGGTGATGATAGTGGTGGTGGTGGTGATGATGATGAATTTGAGGATGTGAAGAGAAAGCTTAAGGGTCACATACTAGAAGACATGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGGAAGCGTTTCAGCATTCTCCACCAAAAGGCTTTACTGGTTTTGGAAGTTCAATACATCAACTACCTGAAGAGTCTCCTAGATTACCTCCTCTAGCAGAAGGGTTTGGTCCTTTCCTCCAAACAAAAGATGGGGGATTTCTACGGTCTATGAATCCCTCACTTTTTATGAATGCTAACAGTGGCGGGAACTTAATTATGCAGATTTCAAACCCTGTTGTTATGCCTACAGAAATGGGTTCAGGGATAATGGAAACTTTGCAGTATTTGGCTTCAATCGGAATTGAAAAGCTTTCGATGCAGGCAAACAAGTTTATGCCTCTCGAAGATATCACGGGGAAGACGATGCAACAAATATCATGGGAAGCTATGTCCAGCTTAGAGGGAAAAGACAGGCAATGTCATTTGCAGGATGATTTAGAGACGCGGAAAGGTTCTTCTTATGTGCAAAGGGACTTGAAAGGATGGTCATCTGGACTAACGCCTAATGAGTTCATTTCAAGTTCAATTTGCAACCGCGGAGATTCAAGTTTTTTTTCGTTGGAAGATCTTGCTCCTTTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTAAAAATACAATCTGAGATGTCGGAAGAGGATGCGCCATCAAACATCATTGCACAATCCTTTAGAGATCTTCCTGGTATCCAAGACAAGTGGGTTAACATTGGAGGTTCTCTTGGCTTGGATGGAGCCGCTGCTTTGCGGTTGTTAAATATTAAAAACAGCGACGACGAAGTTGATGGGATAATGGGATTATCGTTAACGCTTGATGAATGGATGAGACTGGATTCAGGTGAGATTGATGATATAGATAATATCAGTGAGCATACTTGCAAACTTCTTGTTGCACATCATGCCAACACTTTTGACGTAGTCCGTGAGAGTTCAAAGGAAAGGAAGAAACAAAGCAAAGGTCATGGCAGAAAATGCGGTTTGTTAGGAAACAATTTCACGGTTGCACTAATGGTGCAACTTCGCAATCCTCTGAGAAATTATGAGTCTGTTGGAACACCAATGCTAGGTCTTATACAAGTTGAGAGAGTGCTTATCCCACCAAAGCAAAAGATTTACTTGAATGTGTCTCAGGTAGGGAACAATAGTGACGAGGACGACGAGTGTGAAATAAAAGCAAAAGTAGAGATGAAGGACAAGAAAGAGGAGAGTAGTACTAAAGAAAGTGACATTGATCAGTTCAAAATTAAAGAAGTTCATGTTGCAGGTCTTAAGATTCAGTCACACAAAAAGAAGCTTTGGGGTACATCAAATCAGCAACAATCTGGTTCCCGTTGGTTGATTGCTAATGGAATGGGCAAGAGTAATAAGAATTCATTTACTAAGTCTAAGGATGCTCCTAAAGTTGGTGGTGCTCATGTCACCACCACAAAGGTGCAACCTGGGGACACATTGTGGAGCATATCATCACGTATTTTTGGAGCACTGAATACACATATAAGAAATCCCAATATCATTATACCAAATGATTCTAAAGAATAG 3132 0.3908 MLPKSEGGEELLKKDVETITKTLYTEKTLSKNSSASKHNDPKPKPDKEDNNNFKKDKKSIWNWKLLRALSLTRSKKFNCCFSLQVHFIEGLPLSFNDKSLCVHWKRRDQHFVTPPTKVVRGVAKFQDILSCTCSIVGSKRGSYNSAKYEAKHFMLYASVLGVPELDLGNHRLDITRLLPLSLEDLEEEKNSGKWSTSYRLSGKAKGAVMNVSFGYMVVCDNNTFAPNVLSSRQNCMALSKTDVNPCQYSSRVIDEVKDLHEVLTSTNSAKVGSTDVVLSKKFDDENTCSPLHEKPELVPKENLEPIKLDVFQENLETGETVEPRDYFTPESVKESYDECDRFSVVDQGVEFSSNEHIKLKESIVEPIVGSSKESTVVHEFSNKKDELYTKELLLQEIESALNCISELETVASESPKIMEVTSESKFRKSHSLESLDDVTESVAGEFLSMLGLDNSPTGFSFESEPESPRERLLRQFEKDIGSDGFSFFDDYDGDGGDDSGGGGDDDEFEDVKRKLKGHILEDMETEALMREWGLNEEAFQHSPPKGFTGFGSSIHQLPEESPRLPPLAEGFGPFLQTKDGGFLRSMNPSLFMNANSGGNLIMQISNPVVMPTEMGSGIMETLQYLASIGIEKLSMQANKFMPLEDITGKTMQQISWEAMSSLEGKDRQCHLQDDLETRKGSSYVQRDLKGWSSGLTPNEFISSSICNRGDSSFFSLEDLAPLAMDKIEALSMEGLKIQSEMSEEDAPSNIIAQSFRDLPGIQDKWVNIGGSLGLDGAAALRLLNIKNSDDEVDGIMGLSLTLDEWMRLDSGEIDDIDNISEHTCKLLVAHHANTFDVVRESSKERKKQSKGHGRKCGLLGNNFTVALMVQLRNPLRNYESVGTPMLGLIQVERVLIPPKQKIYLNVSQVGNNSDEDDECEIKAKVEMKDKKEESSTKESDIDQFKIKEVHVAGLKIQSHKKKLWGTSNQQQSGSRWLIANGMGKSNKNSFTKSKDAPKVGGAHVTTTKVQPGDTLWSISSRIFGALNTHIRNPNIIIPNDSKE 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05152 1043 MobiDBLite consensus disorder prediction 27 53 - -
Trre15g05152 1043 MobiDBLite consensus disorder prediction 981 1005 - -
Trre15g05152 1043 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 11 1039 IPR039614 -
Trre15g05152 1043 MobiDBLite consensus disorder prediction 37 53 - -
Trre15g05152 1043 CDD LysM 1008 1038 IPR018392 -
Trre15g05152 1043 MobiDBLite consensus disorder prediction 490 505 - -
Trre15g05152 1043 ProSiteProfiles C2 NT-type domain profile. 69 217 IPR019448 -
Trre15g05152 1043 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 74 214 IPR019448 -
Trre15g05152 1043 ProSiteProfiles LysM domain profile. 1005 1043 IPR018392 -
Trre15g05152 1043 MobiDBLite consensus disorder prediction 487 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05152 Trre-Chr15 61142868 61146106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05152 - - cam:101503777 1397.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05152 15 61142868 61146106 Trre15g05152 15 61142868 61146106 ECH
Trre15g05152 15 61142868 61146106 Trre3g02448 3 23500564 23504532 PCT