Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02381 ATGGCGAGGCTACTTCGAAGCGCCAACACTTTTCTCCTCAATCGCTCTTTCTACAACCATTGTCTTCCAACGCGCTTTTGCTTCAAAAATGGAGTATTGGGCACAACTCAAGTTTTGAGCTTTTCAAGTAATAAAGGTTGGCTTAGTGAGTGTCGTCTACGTGTTTGGTGTTTGTGTTTTATAGGTTGGCTTTGTAAGAAGCGCGCTAAATCAGATGGAAGTGACTCGGGTGAAGATAACATGTCTAAGAAAGATTTAGCCCTACAACAAGCCATGGATCAGATCACCTCTACATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTACTGTCTCACCCAAAAATGTACCTGTAGTGTCAACTGGTTCTTTTGCTCTTGATATAGCGCTAGGAATCTTTGGTCTTCCAAAGGGGCGCGTTGTGGAAATATTCGGTCCAGAGGCTTCTGGGAAAACGACTCTTGCTTTGCATGTAATTGCAGAGGCACAGAAGGAAGGAGGATATTGCGCCTTTATTGATGCTGAGCATGCACTTGACAAGTCACTTGCAGAGTCTATTGGTGTAAATACCCAGAACTTGCTTCTTTCACAGCCAGATTGTGGTGAACAGGCACTTAGCCTTGTGGATACCTTAATTCGGAGTGGTTCGATTGATGTAATTGTTGTCGATAGCGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGGTTGATGAGCCAGGCTCTTCGGAAATTGTGCCACTCCTTGTCACTTTCACAGTGTATATTGATTTTTATAAATCAGGTAAGGTCAAAGATTTCTACTTTTGGCGGATTCGGAGGGCCTACTGAAGTTACTTGTGGTGGCAATGCATTGAAGTTCTATTCTTCTGTGAGGCTAAATATCAAAAGAATAGGGTTTGTCAAGAAGGGTGAAGAGACTTTAGGTAGCCAGGTTCTTGTCAAAGTTGTGAAGAACAAGCACGCCCCTCCATTTAAAACTGCGCAGTTTGAGCTTGAATTCGGAAAGGGCATATGCCGAGAAGCAGAGATTATAGAGTTGAGCATAAAACACAAATTCATTAAAAAGAGTGGTTCATTTTACGAATACAATGGCAAGAATTTCCACGGGAAGGATGCACTAAAAAATCACCTGATCAACAGTGACGGTTTACAAGAATTAACAACAAAGCTTAGAGAAAAGCTTCTCAATGCCGAGCCGGAAACAGTTTCCGAATCACAGACGATGGATCAAGATGTTACAGACGAAACATTATCTCCTGATGAAGAAGCTGCTATTGTTGCAGAAGCTTGA 1329 0.4289 MARLLRSANTFLLNRSFYNHCLPTRFCFKNGVLGTTQVLSFSSNKGWLSECRLRVWCLCFIGWLCKKRAKSDGSDSGEDNMSKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRVVEIFGPEASGKTTLALHVIAEAQKEGGYCAFIDAEHALDKSLAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKKSGSFYEYNGKNFHGKDALKNHLINSDGLQELTTKLREKLLNAEPETVSESQTMDQDVTDETLSPDEEAAIVAEA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02381 442 MobiDBLite consensus disorder prediction 410 433 - -
Trre3g02381 442 PANTHER RECA 66 420 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 Hamap Protein RecA [recA]. 84 411 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 NCBIfam recombinase RecA 84 404 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 ProSiteProfiles RecA family profile 2. 284 355 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Trre3g02381 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 350 IPR027417 -
Trre3g02381 442 MobiDBLite consensus disorder prediction 412 426 - -
Trre3g02381 442 PRINTS RecA protein signature 173 202 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 PRINTS RecA protein signature 207 236 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 PRINTS RecA protein signature 293 321 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 PRINTS RecA protein signature 326 355 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 PRINTS RecA protein signature 245 274 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 FunFam Recombinase RecA 113 411 - -
Trre3g02381 442 SMART AAA_5 137 311 IPR003593 GO:0016887
Trre3g02381 442 Pfam recA bacterial DNA recombination protein 87 350 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 SUPERFAMILY RecA protein, C-terminal domain 352 405 IPR023400 -
Trre3g02381 442 ProSitePatterns recA signature. 296 304 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Trre3g02381 442 CDD RecA 115 352 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre3g02381 442 ProSiteProfiles RecA family profile 1. 115 274 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Trre3g02381 442 Gene3D - 114 412 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02381 Trre-Chr3 22705250 22710573 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02381 K03553 - gmx:100807627 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02381 3 22705250 22710573 Trre3g02381 3 22705250 22710573 ECH
Trre15g05182 15 61321819 61326936 Trre3g02381 3 22705250 22710573 PCT