Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05182 ATGGCGAGGTTGCTTCGTAACACTTCCTTACTCACACGCTCTCTATTCGCTTCTCAGGGTTTGAAATTAGGAGTATCTAGCACTTTTCAGTTATTGACCTTTTCATCCAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGATAACATGTCTAAGAAAGATTTGGCCCTTAAGCAAGCTCTTGATCAGATCACTTCTGCATTTGGAAAAGGATCTATCATGTGGCTTGGTCGCTCTGACACACCAAAAGATGTACCAGTAGTGTCTACTGGTTCTTTTGCTCTAGATATAGCACTAGGATGTGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGGAAAACAACTCTCGCTTTACATGTGATTGCAGAGGCGCAGAAACAAGGAGGCTATTGTGTCTTTGTTGACGCCGAGCATGCCCTTGATAAGACCCTTGCAGAGTCTATTGGTGTGAATACTCAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAGGCACTTAGTCTCGTGGACACCTTAATCCGTAGTGGTTCAATTGATGTAATTGTTGTTGATAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCACTTCGAAAATTGAGCCACTCCTTGTCACTTTCTCAAAGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCTACCGAAGTTACATGCGGTGGTAATGCGTTGAAATTTTATGCTTCTGTGCGGCTTAATATTAAGAGAATAGGGTTTATCAAGAAGGGTGAAGAGGTTGTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATATGTAGAGAAGCAGAGATTATAAAGTTGAGCTTAAAATACAAATTCATCACAAAAGCTGGTTCTATGTATTACTATAATGAACACAATTTCCGCGGTGTGGATGCTCTCAAGAGTTTCCTAGCTGAGAATTATAGTGCTTTAGAAGAACTGGAAATGAAAATTAGGGAGAAGCTTTTAAAACCCGAGACAGACAAGGTAGCAGAGTCAGATGGAGATGTTACCGAAGAAATTGCTACCCTTGATTCTACTGATGAAGAAAACACAGCTGTTGTAGAAGCATGA 1251 0.4237 MARLLRNTSLLTRSLFASQGLKLGVSSTFQLLTFSSKGRRRSKSDGSDSGEDNMSKKDLALKQALDQITSAFGKGSIMWLGRSDTPKDVPVVSTGSFALDIALGCGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFIKKGEEVVGSQVLVKVVKNKLAPPFKTAEFELQFGKGICREAEIIKLSLKYKFITKAGSMYYYNEHNFRGVDALKSFLAENYSALEELEMKIREKLLKPETDKVAESDGDVTEEIATLDSTDEENTAVVEA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05182 416 Gene3D - 87 389 IPR027417 -
Trre15g05182 416 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 SMART AAA_5 110 284 IPR003593 GO:0016887
Trre15g05182 416 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
Trre15g05182 416 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Trre15g05182 416 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Trre15g05182 416 NCBIfam recombinase RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 CDD RecA 88 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 FunFam Recombinase RecA 86 385 - -
Trre15g05182 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 323 IPR027417 -
Trre15g05182 416 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 ProSiteProfiles RecA family profile 2. 257 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Trre15g05182 416 PANTHER RECA 34 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre15g05182 416 MobiDBLite consensus disorder prediction 388 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05182 Trre-Chr15 61321819 61326936 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05182 K03553 - gmx:100781271 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05182 15 61321819 61326936 Trre15g05182 15 61321819 61326936 ECH
Trre15g05182 15 61321819 61326936 Trre3g02381 3 22705250 22710573 PCT