Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02373 ATGGCTGAAAATTACCCTTTTCCAATATACTTCATTCTCCTAATAATAACCATAACACGTTTAATATCAACCGTAGGTAAAACCGAGCAATGGAAATCATCATCATCATCATCACTACCAATAGAATTATACACAAACAAGTTCATATCTCAAAAACTCACAAACAACCGAAAAGCCATTGAAAAAGCTTCAAGTGATTACGGCAACCTCGTACATGATTTACCAGCAGCGGTATTTAGTCCAACAACGGTAAACGACATAGTAAGTCTTATAAAGTTGTCGTTTAATAGTTCTGTCCCTTTTGGTATAGCCACAAGAGGACAAGGACATTCCACGCGAGGACAAGCTATGGCACGTGATGGTGTCGTTGTTGATATGAAAGATTTGAGAGAAAATAAAAAAAATAAAAATAAAAATATTAAGGTTGTTTTTGAGGATTCTAAGGTTGGAGGAGGATACTATTATGTTGATGTTGGAGGGGAACAATTATGGATTGATGTTTTATATGAAACACTTGAATATGGACTTGCACCTATTTCTTGGACTGATTATCTTTACTTAACTATTGGTGGAACATTATCTAATGCTGGTATTAGTGGTCAAACATTTCGTTATGGTCCTCAAATTACTAGTGTTCATCAATTGGATGTTGTCACAGGAAAAGGAGAATTTGTAACATGCTCTAAACAGAACAATTCAGAATTATTTCATGGTGTTCTTGGAGGTTTAGGACAATTTGGAATTATAACAAGGGCAAGAATTGCTCTTGAGCCAGCACCAAAGAGGGTTAAATGGGTAAGACTTTTGTATAATGATTTTGGTGCTTTTACAAAAGACCAAGAACGTTTAATTTCAATGAAAGGAATTAACAAAAATAGTGGATTGGATTATTTGGAAGGGATGTTATTAATGCATCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTATCCGACCATCACAGAATAATTTCTCTAGTAACACAACATAGGGTCCTCTATTGCCTGGAAATTGCTAAATATTATGATGACCATTCTGAAAACAATGTCAACAAGGAAATCCAAGTTTTGCTCCAAGGACTGAACTACATCCCTGGATTTTATTATGAAAAAAATGTGTCATTTATTGAGTTCTTAAATAGAGTAAGAAGTGGAGAGTTGAAACTACAATCACAAGGATTATGGGATGTTCCTCATCCATGGCTTAATATGTTTATACCAAAATCAAGAATCATGGATTTTAATTCAGGTGTCTTCAAAAAGATAATTCAAAAAAGAAACATCACCACAGGACCTGTCTTGGTTTATCCCATGAATAGAAATAAGTGGGACAATAACATGTCAGCAACAATACCAGATGATGAGGATGATGTCTTCTATGCTGTTGGATTTTTGCACTCAAGTGGGTTTGATAATTGGAAAGCATTTGATGCTCAAAACAAAGAAATTTTGCAATTTTGTAATGATGCTGAAATTAAGTATAAGCTATATCTTCCCCACTACAACACACAAGAAGAGTGGACAAACCATTTTGGTCCTAAAAAATGGAAAACTTTTTTACAAAGAAAATATGAGTTTGATCCAAGAATGATTCTATCACCTGGACAAAGAATCTTCAACAATAATTAA 1635 0.3413 MAENYPFPIYFILLIITITRLISTVGKTEQWKSSSSSSLPIELYTNKFISQKLTNNRKAIEKASSDYGNLVHDLPAAVFSPTTVNDIVSLIKLSFNSSVPFGIATRGQGHSTRGQAMARDGVVVDMKDLRENKKNKNKNIKVVFEDSKVGGGYYYVDVGGEQLWIDVLYETLEYGLAPISWTDYLYLTIGGTLSNAGISGQTFRYGPQITSVHQLDVVTGKGEFVTCSKQNNSELFHGVLGGLGQFGIITRARIALEPAPKRVKWVRLLYNDFGAFTKDQERLISMKGINKNSGLDYLEGMLLMHQGPINNWRSSFFPLSDHHRIISLVTQHRVLYCLEIAKYYDDHSENNVNKEIQVLLQGLNYIPGFYYEKNVSFIEFLNRVRSGELKLQSQGLWDVPHPWLNMFIPKSRIMDFNSGVFKKIIQKRNITTGPVLVYPMNRNKWDNNMSATIPDDEDDVFYAVGFLHSSGFDNWKAFDAQNKEILQFCNDAEIKYKLYLPHYNTQEEWTNHFGPKKWKTFLQRKYEFDPRMILSPGQRIFNNN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02373 544 FunFam Cytokinin dehydrogenase 2 262 499 - -
Trre3g02373 544 SUPERFAMILY FAD-linked oxidases, C-terminal domain 260 542 IPR016164 GO:0003824|GO:0050660
Trre3g02373 544 ProSiteProfiles PCMH-type FAD-binding domain profile. 71 259 IPR016166 GO:0071949
Trre3g02373 544 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 260 541 IPR015345 GO:0009690|GO:0019139|GO:0050660
Trre3g02373 544 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 75 110 IPR006093 GO:0016491
Trre3g02373 544 Gene3D - 262 499 IPR016170 -
Trre3g02373 544 Pfam FAD binding domain 75 228 IPR006094 GO:0050660
Trre3g02373 544 Coils Coil 126 146 - -
Trre3g02373 544 PANTHER GULONOLACTONE OXIDASE 31 542 - -
Trre3g02373 544 Gene3D - 57 541 IPR016167 -
Trre3g02373 544 Gene3D - 126 261 IPR016169 -
Trre3g02373 544 SUPERFAMILY FAD-binding/transporter-associated domain-like 52 258 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02373 Trre-Chr3 22554934 22561054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02373 K00279 - gmx:100797928 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05189 15 61370561 61376397 Trre3g02373 3 22554934 22561054 PCT